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Laboratoire d'Océanographie Microbienne
UMR 7621

Publications 2018

43 Publications

  1. Benavides M., K. Shoemaker, P.H. Moisander, J. Niggemann, T. Dittmar, S. Duhamel; O. Grosso, M. Pujo-Pay, S. Hélias-Nunige, A. Fumenia, S. Bonnet (2018) Aphotic N2 fixation along an oligotrophic to ultraoligotrophic transect in the western tropical South Pacific Ocean. Biogeosciences. 15:3107-3119.
  2. Berline L., R. Leroux, G. Gregori, K. Leblanc, F. Carlotti, M. Thyssen, M. Dugenne, M .Pujo-Pay,  P. Conan, M.-P. Jouandet, N. Bhairy, L. Berline. (2018) Combining laser diffraction, flow cytometry and optical microscopy to characterize a nanophytoplankton bloom in the northwestern Mediterranean. Progress in Oceanography. 163:248-259.
  3. Blanchet M., Fernandez C., Joux F. (2018) Photoreactivity of riverine and phytoplanktonic dissolved organic matter and its effects on the marine bacterial growth and composition in Mediterranean Sea. Progress in Oceanography 163:82-93
  4. Celussi M, Quero Grazia M, Zoccarato L, Franzo A, Corinaldesi C, Rastelli E, Lo Martire M, Galand PE, Ghiglione J-F, Chiggiato J, Coluccelli A, Russo A, Pallavicini A, Fonda Umani S, Del Negro P, Luna GM (2018) Planktonic prokaryote and protist communities in a submarine canyon system in the Ligurian Sea (NW Mediterranean) Progress in Oceanography. 168:210-221.
  5. Chapron L, Peru E, Engler A, Ghiglione J-F, Meistertzheim A-L, Pruski AM, Purser A, Vétion G, Galand PE, Lartaud F (2018) Microplastics are a serious threat for deep-water coral reefs. Scientific Reports.  8:15299
  6. Conan, P., P. Testor, C. Estournel, F. D'Ortenzio, and X. Durrieu de Madron, Observing winter mixing and spring bloom in the Mediterranean, EOS - Earth & Space Science News, Editors’ Vox , 99, 1-8, 2018. doi.org/10.1029/2018EO105887
  7. Conan P., P. Testor, C. Estournel, F. D’Ortenzio, M.  Pujo-Pay, X. Durrieu de Madron. (2018) Preface to the special section: Dense water formations in the North Western Mediterranean: from the physical forcings to the biogeochemical consequences. Journal of Geophysical Research. 123:6983-6995.
  8. Dadaglio L., J. Dinasquet, I. Obernosterer, F. Joux (2018) Differential responses of bacteria to diatom-derived dissolved organic matter in the Arctic Ocean. Aquat Microb Ecol 82:59-72.
  9. Dinasquet J., E. Ortega-Retuerta, C. Lovejoy, I. Obernosterer. (2018) Editorial: Microbiology of the rapidly changing polar environments. Front.Mar. Sci. 5: 154. Doi: 10.3389/fmars.2018.00154
  10. Dussud C., C. Hudec, M. George, P. Fabre, P. Higgs, S. Bruzaud, A-M. Delort, B Eyheraguibel, A-L. Meistertzheim, J. Jacquin, J. Cheng, N. Callac, C. Odobel, S. Rabouille, J-F. Ghiglione (2018) Colonization of non-biodegradable and biodegradable plastics by marine microorganisms. Frontiers in Microbiology. 9 :1571. https://doi.org/10.3389/fmicb.2018.01571
  11. Dussud, A. L. Meistertzheim, P. Conan, M. Pujo-Pay, M. George, P. Fabre, J. Coudane, P. Higgs, A. Elineau, M.L. Pedrotti, G. Gorsky, J.F.Ghiglione. (2018) Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters. Environmental Pollution. 236 :807-816.
  12. Guyon JB, Vergé V, Schatt P, Lozano JC, Liennard M, Bouget F.Y. (2018). Comparative analysis of culture conditions for the optimization of carotenoids conditions in several strains of the picoeukaryote Ostreococcus. Marine Drugs 16 :76. doi:10.3390/md16030076
  13. Henríquez-Castillo C.A., Botebol H., Mouton A., Ramírez-Flandes S., Lozano J-C., Lelandais G., Andrade S., Trefault N., De la Iglesia R., Bouget F-Y. (2018) Genetically engineered Ostreococcus tauri biosensors for copper pollution in coastal marine environments. Front. Environ. Sci. 6:22. doi.10.3389/fenvs.2018.00022
  14. Jacquin J, Cheng J, Odobel C, Conan P, Pujo-Pay M, Meistertzheim AL, Ghiglione JF. Microbial ecotoxicology of marine plastic debris: a review on colonization and biodegradation by the ‘plastisphere’. Frontiers in microbiology. (submitted)
  15. Kessouri F., C. Ulses, C. Estournel, P. Marsaleix, F. D'Ortenzio, T. Severin, V. Taillandier, P. Conan (2018) Vertical mixing effects on phytoplankton dynamics and organic carbon export in the Western Mediterranean Sea. J. Geophys. Res. 123:1647-1669
  16. Koedooder C., A. Guéneuguès, R. Van Geersdaële, V. Vergé, F.-Y. Bouget, Y. Labreuche, I. Obernosterer, S. Blain (2018) The role of the glyoxylate shunt in the acclimation to iron limitation in marine heterotrophic bacteria. Front. Mar. Sci. 5:435. doi: 10.3389/fmars.2018.00435
  17. Lambert S, Tragin M, Lozano JC, Ghiglione JF, Vaulot D, Bouget FY, Galand P. (2018) Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations. ISME Journal. doi.org/10.1038/s41396-018-0281-z
  18. Landa M., Blain S., Harmand J., Monchy S., Rapaport A., Obernosterer I. (2018). Major changes in the composition of a Southern Ocean bacterial community in response to diatom-derived dissolved organic matter. FEMS Microbiology Ecology. 94:fiy034
  19. Leblanc, K., Quéguiner, B., Diaz, F., Cornet, V., Michel-Rodriguez, M., Durrieu de Madron, X., Bowler, C., Malviya, S., Thyssen, M., Grégori, G., Rembauville, M., Grosso, O., Poulain, J., de Vargas, C., Pujo-Pay, M., and Conan, P. (2018) Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export, Nature Communications, 9, 953, 2018.
  20. Lepiniec L, Devic M, Roscoe TJ, Bouyer D, Zhou DX, Boulard C, Baud S, Dubreucq B. (2018) Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development. Plant Reprod. 31:291-307.
  21. Leroux R., G. Grégori, K. Leblanc, F. Carlotti, M. Thyssen, M. Dugenne, M. Pujo-Pay, P. Conan, M.-P. Jouandet, N. Bhairy, L. Berline (2018) Combining laser diffraction, flow cytometry and optical microscopy to characterize a nanophytoplankton bloom in the Northwestern Mediterranean. Progress in Oceanography. 163:248-259.
  22. Liénart C., N. Savoye, V. David, P. Ramond, P. R. Tress, … J. Caparros,  … P. Conan, … M. Pujo-Pay et al. (2018) Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale. Progress in Oceanography. 162:271-289.
  23. Meistertzheim AL, Pochon X, Wood SA, Ghiglione JF, Hédouin L. Development of a quantitative PCR-High Resolution Melting assay for absolute measurement of coral-Symbiodiniaceae associations and its application to investigating variability at two geographic scales. Marine Biology. (in press).
  24. Mills M.M., Z.W. Brown, S.R. Laney, E. Ortega-Retuerta, K.E. Lowry, G.L. van Dijken, K.R. Arrigo (2018) Nitrogen limitation of the summer phytoplankton and heterotrophic prokaryote communities in the Chukchi Sea. Front. Mar. Sci. 5:362.
  25. Moutin T., T. Wagener, M. Caffin, A. Fumenia, A. Gimenez, M. Baklouti, P. Bouruet-Aubertot, M. Pujo-Pay, K. Leblanc, D. Lefèvre, S. Helias Nunige, N. Leblond, O. Grosso, A. de Verneil (2018) Nutrient availability and the ultimate control of the biological carbon pump in the western tropical South Pacific Ocean. Biogeosciences. 15:2961-2989.
  26. Molina V, Eissler Y, Cornejo M, Galand PE, Dorador C, Hengst M, Fernandez C, Francois JP (2018). Distribution of greenhouse gases in hyper-arid and arid areas of northern Chile and the contribution of the high altitude wetland microbiome (Salar de Huasco, Chile). Antonie van Leeuwenhoek 111: 1421-1432
  27. Molina, V., Dorador, C., Fernandez, C., Bristow, L., Eissler, Y., Hengst, M., Hernandez, K.,  Mork Olsen, L., Harrod, C., Marchant, F., Anguita, C., Cornejo, M., (2018) The activity of nitrifying microorganisms in a high-altitude Andean wetland. FEMS Microbiology Ecology, 94, 2018, fiy062. doi: 10.1093/femsec/fiy062
  28. Ortega-Retuerta E., C. Marrasé, A. Muñoz-Fernández, M. M. Sala, R. Simó, J. M.Gasol. (2018) Seasonal dynamics of transparent exopolymer particles (TEP) and their drivers in the coastal NW Mediterranean Sea Science of Total Environment. Volumes 631–632, 1 August 2018, Pages 180-190
  29. Paerl RW, Bertrand E, Schatt P, Mehiri, Niehaus TD, HansonAD, Riemann, Bouget F-Y (2018). Carboxylated thiazole: A newly recognized microbial micronutrient currency and, critical component of thiamin biosynthesis. Nature Sci Rep Sci Rep. 8:8876. doi: 10.1038/s41598-018-27042-8
  30. Rain-Franco, A., Rojas, C., Fernandez, C. (2018) Potential effect of pesticides currently used in salmon farming on photo and chemoautotrophic carbon uptake in central – southern Chile. Aquaculture. 486: 271-284.
  31. Rembauville M., Blain S., Manno C., Tarling G., Anu Thompson A., Wolff G.,  Salter I. (2018) The role of diatom resting spores in pelagic–benthic coupling in the Southern Ocean. Biogeosciences, 15, 3071-3084
  32. Salter I. (2018) Seasonal variability in the persistence of dissolved environmental DNA (eDNA) in a marine system: The role of microbial nutrient limitation. PLos ONE. 13(2): e0192409. https://doi.org/10.1371/journal.pone.0192409
  33. Roscoe TJ, Vaissayre V, Paszkiewicz, Clavijo F, Kelemen Z, Michaud C, Lepiniec L, Dubreucq B, Zhou D-X, Devic M. (2018) Regulation of FUSCA3 expression during seed development in Arabidopsis Plant Cell. Phys. (accepted).
  34. Sanhueza-Guevara, S., Neira-Osses, K., Rojas, Cl., Geneviere, A., Fernandez, C. (2018) Effects of three pesticides used to control sea lice on the early development of Choromytilus chorus, Sphaerechinus granularis, and Paracentrotus lividus. Latin American Journal of Aquatic Research (accepted)
  35. Spungin D., N. Belkin, R. Foster, M. Stenegren, A. Caputo, M. Pujo-Pay, N. Leblond, C. Dupouy, S. Bonnet, I. Berman-Frank. (2018) Programmed cell death in diazotrophs and the fate of organic matter in the western tropical South Pacific Ocean during the OUTPACE cruise. Biogeosciences. 15:3893-3908.
  36. Tamborski J, Bejannin S, Garcia-Orellana J, Souhaut M, Charbonnier C, Anschutz P, Pujo-Pay M, Conan P, Crispi O, Monnin C, Stieglitz T, Rodellas V, Andrisoa A, Claude C, Van Beek P. (2018) A comparison between water recirculation and terrestrial-driven dissolved silica fluxes to the Mediterranean Sea traced using radium isotopes. Geochimica Cosmochimica Acta 238:496-515.
  37. Tenório M.M.B., Dupouy C. , Rodier M., Neveux J. (2018) Trichodesmium and other planktonic cyanobacteria in New Caledonian waters (SW tropical Pacific)during an El Niño episode. Aquatic Microbial Ecology. Vol. 81: 219–241.
  38. Testor, P., A. Bosse, L. Houpert, F. Margirier, L. Mortier, H. Legoff, D. Dausse, M. Labaste, J. Karstensen, D. Hayes, A. Olita, A. Ribotti, K. Schroeder, J. Chiggiato, R. Onken, E. Heslop, B. Mourre, F. D'ortenzio, N. Mayot, H. Lavigne, O.d. Fommervault, L. Coppola, L. Prieur, V. Taillandier, X.D.d. Madron, F. Bourrin, G. Many, P. Damien, C. Estournel, P. Marsaleix, I. Taupier‐Letage, P. Raimbault, R. Waldman, M.N. Bouin, H. Giordani, G. Caniaux, S. Somot, V. Ducrocq, and P. Conan (2018) Multiscale Observations of Deep Convection in the Northwestern Mediterranean Sea during Winter 2012–2013 Using Multiple Platforms, Journal of Geophysical Research: Oceans. 123 :1745–1776. doi:10.1002/2016JC012671
  39. Valdés, V., F. Carlotti, R. Escribano, K. Donoso, Marc Pagano, V. Molina, C. Fernandez (2018) Nitrogen and phosphorus recycling mediated by copepods and response of bacterioplankton community from three contrasting areas in the western tropical South Pacific (20°S). Biogeosciences 15:6019-6032. doi:10.5194/bg-15-6019-2018.
  40. Valdés V., Fernandez C, Molina V., Escribano R., Joux F. (2018) Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community. Frontiers in Marine Sciences 4:343. doi: 10.3389/fmars.2017.00343
  41. Van Wambeke F., A. Gimenez, S. Duhamel, C. Dupouy, D. Lefevre, M. Pujo-Pay, T. Moutin (2018) Dynamics and controls of heterotrophic prokaryotic production in the western tropical South Pacific Ocean: links with diazotrophic and photosynthetic activity. Biogeosciences. 15:2669-2689.
  42. Zamanillo M., E. Ortega–Retuerta, S. Nunes, P. Rodríguez–Ros, M. Estrada, M. Montserrat Sala, R. Simó (2018) Main drivers of transparent exopolymer particle distribution across the surface Atlantic Ocean. Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-359
  43. Ziegler M, Quéré G, Ghiglione JF, Iwankow G, Barbe V, Wincker P, Planes S, Voolstra CR (2018) Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems. Marine Pollution Bulletin. 129:392-398.

 

Soumis, en révision

Annunziata R, Ritter A, Fortunato AE, Cheminant-Navarro S, Agiera N, Huysman M, Petroutsos D, Finazzi G, Wingeg P, Bones A, Bouget FY, Lagomarsino MG, Bouly JP, Falciatore A. (2018). RITMO1 regulates diurnal rhythmicity in the marine diatom Phaeodactylum tricornutum. BioRXiv doi: https://doi.org/10.1101/271445. (under Revision in PNAS)

Catao E, Pollet T, Misson B,  Garnier C, Ghiglione JF, Barry-Martinet R, Maintenay M, Bressy C, Briand JF. Shear stress as a major driver of marine biofilm communities in the NW Mediterranean Sea. ISME Journal. (submitted)

Fichez R., Chifflet S., Conan P., Contreras R., Denis L., Douillet P., Grenz C., Ghiglione J-F., Gutiérrez Mendieta F.,, Origel-Moreno M., Muñoz Caravaca A., Pujo-Pay M., Zavala-Hidalgo J. (rev) Spatiotemporal variability in transitional waters of Terminos Lagoon (Mexico): The 2009-2010 El Niño-related drought as a harbinger of forthcoming regional-scale climate change. (rev. REEC-D-18-00132)

Fichez R, Linares C, Chifflet S, Conan P, Contreras Ruiz Esparza A, Denis L, Douillet P, Grenz C, Ghiglione JF, Gutiérrez Mendieta F, Origel-Moreno M, Muñoz Caravaca A, Pujo-Pay M, Zavala-Hidalgo J. Multiparametric typology of transitional waters in a tropical lagoon (Terminos Lagoon, Mexico), spatiotemporal variability and impact of the 2009-2010 El Niño related drought. Regional Environmental Change (under correction).

Guyon JB, Lambert, S., Quentel M, Bouget, FY. Contributions of environmental temperature and light parameters to temporal niche partitioning of seasonal Mamiellophyceae. ISME J. (Submitted)

Lambert, S., Lozano, J.-C., Bouget, FY., Galand, P.E (2018). Switching partners in environmentally challenged coastal marine microbes. PNAS (submitted)

Terzić E., P. Lazzari, E. Organelli, C. Solidoro, S. Salon, F. D'Ortenzio, and P. Conan. Merging bio-optical data from Biogeochemical-Argo floats and models in marine biogeochemistry. Biogeosciences (rev. bg-2018-307)

Thurber V. R., S. F. Heron, C.R Voolstra, E. Boissin, G. Iwankow, P. Conan, M. L. Heron, C. M. Eakin. Remote Pacific Island Coral Bleaching Driven By Cold Water Thermocline Shoaling / In situ observations of coral bleaching on one of the world’s most remote and pristine islands. (submitted)

 

 

 

 

 

30/11/18

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