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Laboratoire d'Océanographie Microbienne
UMR 7621

Publications 2020

Articles

  1. Alneberg J., Bennke C., Beier S., Bunse C., Quince C., Ininbergs K., Riemann L., Ekman M., Jürgens K., Labrenz M., Pinhassi J., Andersson A.F. (2020) Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes. Communications Biology 3:119. https://doi.org/10.1038/s42003-020-0856-x
  2. Beier S., Andersson A.F., Galand P.E., Hochart C., Logue J.B., McMahon K., Bertilsson S. (2020) The environment drives microbial trait variability in aquatic habitats. Molecular Ecology. https://doi.org/10.1111/mec.15656
  3. Bejannin S, Tamborski J, Van Beek P , Souhaut M, Stieglitz T, Radakovitch O, Claude C, Conan P, Pujo-Pay M, Crispi O, Le Roy E, Estournel C. (2020). Nutrient fluxes associated with submarine groundwater discharge from karstic coastal aquifers (Côte Bleue, French Mediterranean Coastline). Frontiers Environ.  Sci., 7 : 205. https://doi.org/10.3389/fenvs.2019.00205
  4. Blain S., Rembauville M., Crispi O., Obernosterer I. (2020) Synchronized autonomous sampling reveals coupled pulses of biomass and export of morphologically different diatoms in the Southern Ocean  Limnology and Oceanography. Doi 10.1002/lno.11638
  5. Castillo C., Fernández C., Gutiérrez M.H., Aranda M., Urbinae M.A., Yáñez J., Álvarez A., Pantoja-Gutiérrez S.. (2020). Water column circulation drives microplastic distribution in the Martínez-Baker channels; A large fjord ecosystem in Chilean Patagonia. Marine Pollution Bulletin. 160:111591. https://doi.org/10.1016/j.marpolbul.2020.111591
  6. Christaki U., Gueneugues A., Liu Y., Blain S., Catala P., Colombet J., Debeljak P., Jardillier L., Irion S., Planchon F., Sassenhagen I., Sime‐Ngando T., Obernosterer I. (2020) Seasonal microbial food web dynamics in contrasting Southern Ocean productivity regimes. Limnology Oceanography. https://doi.org/10.1002/lno.11591
  7. Faktorová D, Nisbet R.E, Fernández Robledo JA ... Bouget FY... Lozano J-C., …Vergé V., … Lukeš J. (2020). Genetic tool development in marine protists: Emerging model organisms for experimental cell biology. Nature Methods. 17(5):481-494. DOI: 10.1038/s41592-020-0796-x
  8. Fernandez C., Rain-Franco A.,  Rojas C.,  Molina V. (2020) Ammonium release via dissolution and biological mineralization of food pellets used in salmon farming. Aquaculture Research. Accepted. 
  9. Fourquez M., Bressac M., Deppeler S. L., Ellwood M., Obernosterer I., Trull T., Boyd P. (2020) Microbial competition in the subpolar Southern Ocean: an Fe-C co-limitation experiment. Frontiers in Marine Sciences. https://doi.org/10.3389/fmars.2019.00776
  10. Ghiglione J-F., Laudet V. (2020) Fish larvae: a polluted Terra Incognita unveils. Current Biology. 30 :R130-R133
  11. Gohin F., Bryère P., Lefebvre A., Sauriau P.-G., Savoye N., Vantrepotte V., Bozec Y., Cariou T., Conan P., Coudray S., Courtay G., Françoise S., Goffart A., Hernández Fariñas T., Lemoine M., Piraud A., Raimbault P., Rétho M. (2020) Satellite and In Situ Monitoring of Chl-a, Turbidity, and Total Suspended Matter in Coastal Waters: Experience of the Year 2017 along the French Coasts. J. Mar. Sci. Eng., 8 (9), 665. https://doi.org/10.3390/jmse8090665
  12. Henschke N., Blain S., Cherel Y., Cotté C., Espinasse B., Hunt B.P.V., Pakhomov E. A.  Distribution, abundance and population demographics of Salpa thompsoni on the Kerguelen Plateau (accepted). Journal of Marine Systems
  13. Kedzierski M., Geslain E., PedrottiM.L., Ghiglione J-F., Bruzaud S. (2020) Pre-detection of microplastics using active thermography. Chemosphere 262: 127648.
  14. Koedooder C., Guéneuguès A., Van Geersdaële R., Bouget F.-Y., Obernosterer I., Blain S. (2020) The interplay between iron limitation, light, and carbon in the proteorhodopsin-containing Photobacterium angustum S14. (2020) FEMS Microbiol. Ecol. 96, fiaa103, doi: 10.1093/femsec/fiaa103
  15. Lheureux A., Savoye N., Del Amo Y., Goberville E., Bozec Y., Breton E., Conan P., L’Helguen S., Mousseau L., Raimbault P., Rimelin-Maury P., Seuront L., Vuillemin R., Caparros J., Cariou T., Cordier M-A., Corre A-M., Costes L., Crispi O., Crouvoisier M., de Lary de Latour H., Derriennic H., Devesa J., Durozier M., Ferreira S., Garcia N., Grossteffan E., Gueux A., Lafont M., Lagadec V., Lecuyer E., Leroux C., Macé E., Maria E., Mornet L., Nowaczyk A., Parra M., Petit F., David V. 2020. Bi-decadal variability in physico-biogeochemical characteristics of the temperate coastal ecosystems: from large-scale to local drivers. MEPS (in press)
  16. Liénart C., Savoye N., Conan P., David V., Barbier P., Bichon S., Charlier K., Costes L., Derriennic H., Ferreira S., Gueux A., Hubas C., Maria E., Meziane T. (2020) Relationship between bacterial compartment and particulate organic matter (POM) in coastal systems: An assessment using fatty acids and stable isotopes, Estuarine, Coastal and Shelf Science, 239, 106720, doi.org/10.1016/j.ecss.2020.106720.
  17. Liu Y, Rembauville M., Crispi O., Blain S., Obernosterer I. (2020) Seasonal dynamics of prokaryotes and their associations with diatoms in the Southern Ocean as revealed by an autonomous sampler. Environmental Microbiology 22, 9 ,3968-3984. doi.org/10.1111/1462-2920.15184
  18. Massicotte, P., Amiraux, R., Amyot, M.-P., Archambault, P., Ardyna, M., Arnaud, L., Artigue, L., Aubry, C., Ayotte, P., Bécu, G., Bélanger, S., Benner, R., Bittig, H. C., Bricaud, A., Brossier, É., Bruyant, F., Chauvaud, L., Christiansen-Stowe, D., Claustre, H., Cornet-Barthaux, V., Coupel, P., Cox, C., Delaforge, A., Dezutter, T., Dimier, C., Dominé, F., Dufour, F., Dufresne, C., Dumont, D., Ehn, J., Else, B., Ferland, J., Forget, M.-H., Fortier, L., Galí, M., Galindo, V., Gallinari, M., Garcia, N., Gérikas-Ribeiro, C., Gourdal, M., Gourvil, P., Goyens, C., Grondin, P.-L., Guillot, P., Guilmette, C., Houssais, M.-N., Joux, F., Lacour, L., Lacour, T., Lafond, A., Lagunas, J., Lalande, C., Laliberté, J., Lambert-Girard, S., Larivière, J., Lavaud, J., Le Gall, F., LeBaron, A., Leblanc, K., Legras, J., Lemire, M., Levasseur, M., Leymarie, E., Leynaert, A., Lopes dos Santos, A., Lourenço, A., Mah, D., Marec, C., Marie, D., Martin, N., Marty, C., Marty, S., Massé, G., Matsuoka, A., Matthes, L., Moriceau, B., Muller, P.-E., Mundy, C. J., Neukermans, G., Oziel, L., Panagiotopoulos, C., Pangazi, J.-J., Picard, G., Picheral, M., Pinczon du Sel, F., Pogorzelec, N., Probert, I., Queguiner, B., Raimbault, P., Ras, J., Rehm, E., Reimer, E., Rontani, J.-F., Rysgaard, S., Saint-Béat, B., Sampei, M., Sansoulet, J., Schmidt, S., Sempéré, R., Sévigny, C., Shen, Y., Tragin, M., Tremblay, J.-É., Vaulot, D., Verin, G., Vivier, F., Vladoiu, A., Whitehead, J., and Babin, M. (2020) Green Edge ice camp campaigns: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom. Earth Syst. Sci. Data, 12, 151–176. https://doi.org/10.5194/essd-12-151-2020
  19. Molina, V., Fernandez C. Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus (Puyuhuapi Fjord, Northern Patagonia, Chile). MicrobiologyOpen (Accepted).
  20. Ortega-Retuerta E., Devresse Q., Caparros J., Marie B., Crispi O., Catala P., Joux F., Obernosterer I. (2020) Dissolved organic matter released by two marine bacterial strains and its bioavailability for Mediterranean Sea prokaryotic communities. Environmental Microbiology (in press) https://doi.org/10.1111/1462-2920.15306
  21. Pellichero V., Boutin J., Claustre H., Merlivat L., Sallée J.B., Blain S., Abrupt onset of Kerguelen bloom detected by multisensors mounted on mooring and BGC floats (2020) Geophysical Research Letter 47, e2019GL085992, https://doi.org/10.1029/2019GL085992
  22. Pesce S., Ghiglione J-F., Topp E., Martin-Laurent F. (2020). Editorial: Microbial EcotoxicologyFrontiers in microbiology 11:1342.
  23. Ratnarajah L., Blain S., Boyd P.W., Fourquez M., Obernosterer I., Tagliabue A. (2020) Resource colimitation drives competition between phytoplankton and bacteria in the Southern Ocean, (accepted), Geophysical Research Letter, DOI: 10.1029/2020GL088369
  24. Roumezi B., Avilan L., Risoul V., Brugna M., Rabouille S., Latifi A. (2020) Overproduction of the Flv3B flavodiiron, enhances the photobiological hydrogen production by the nitrogen-fixing cyanobacterium Nostoc PCC 7120. Microbial Cell Factories 19(65) https://doi.org/10.1186/s12934-020-01320-5
  25. Saint-Béat, B., Fath, B.D., Aubry, C., Colombet, J., Dinasquet, J., Fortier, L., Galindo, V., Grondin, P.-L., Joux, F., Lalande, C., LeBlanc, M., Raimbault, P., Sime-Ngando, T., Tremblay, J.-E., Vaulot, D., Maps, F. and Babin, M. (2020) Contrasting pelagic ecosystem functioning in eastern and western Baffin Bay revealed by trophic network modeling. Elem Sci Anth, 8(1), p.1. DOI: http://doi.org/10.1525/elementa.397
  26. Sánchez-Pérez E.D., Pujo-Pay M., Ortega-Retuerta E., Conan P., Marrasé C. (2020). Mismatched dynamics of dissolved organic carbon and chromophoric dissolved organic matter in the coastal NW Mediterranean Sea. Science of The Total Environment 746-141190. https://doi.org/10.1016/j.scitotenv.2020.141190
  27. Sergi S. Baudena A., Cotté C., Ardyna M., Blain S. d’Ovidio F.. Interaction of the Antarctic Circumpolar Current With Seamounts Fuels Moderate Blooms but Vast Foraging Grounds for Multiple Marine Predators (2020) Frontiers in Marine Sciences, doi: 10.3389/fmars.2020.00416.
  28. Sotomayor-Garcia A., Montserrat Sala M., Ferrera I., Estrada M., Vázquez-Domínguez E., Emelianov M., Cortés P., Marrasé C., Ortega-Retuerta E., Nunes S., M. Castillo Y., Serrano Cuerva M., Sebastián M., Dall’Osto M., Simó R., Vaqué D. (2020) Assessing viral Abundance and community composition in four contrasting regions of the Southern Ocean. Life, 10:107.
  29. Tamborski J., Van Beek P., Conan P., Pujo-Pay M., Odobel C., Ghiglione J-F., Seidel J-L., Arfi B., Diego-Feliue M., Garcia-Orellanaef J., Szafrana A., Souhauta M. (2020) Submarine karstic springs as a source of nutrients and bioactive trace metals for the oligotrophic Northwest Mediterranean Sea. Science of The Total Environment Volume 732, 139106.
  30. Tisserand L., Dadaglio L., Intertaglia L., Catala P., Panagiotopoulos C., Obernosterer I., Joux F. 2020. Use of organic exudates from two polar diatoms by bacterial isolates from the Arctic Ocean. Phil. Trans. R. Soc. A. 378: 20190356
  31. Urbina, M.A., Luna-Jorquera, G., Thiel, M., Acuña-Ruz, T., Amenábar Cristi, M.A., Andrade, C., Ahrendt, C, Castillo, C, Chevallier, A., Cornejo-D'Ottone, M., Correa-Araneda, F., Duarte, C., Fernández, C., Galvàn-Malagòn, C, Godoy, C., González-Aravena, M., Hinojosa I.A., Jorquera, A, Kiessling, T., Lardies, M.A., Lenzi, J., Mattar, C., Munizaga, M., Olguín-Campillay, N., Perez-Venegas, D. J., Portflitt-Toro, M., Pozo, K., Pulgar, J., Vargas, EA. Country's response to tackling plastic pollution in aquatic ecosystems: The Chilean way. Aquatic Conservation: Marine and Freshwater Ecosystems. Accepted.

Chapitres d’ouvrages 

Lami R., Grimaud R., Sanchez-Brosseau S., Six C., Thomas F., West N.J., Joux F., Urios L. (2020) Marine bacterial models for experimental biology. In: Established and emerging marine organisms in experimental biology. Boutet B. & Schierwater B. (eds). CRC Press (in press).

Lartaud F., Meistertzheim A.L., Reichert J., Ziegler M., Peru E., Ghiglione J-F. (2020) Plastics, an additional threat for coral ecosystems. Perspectives on the Marine Animal Forests, Springer-Verlag. https://www.springer.com/gp/book/9783030570538

Dorador, C., Molina, V., Hengst, M., Eissler, Y., Cornejo, M., Fernández, C., Pérez, V. Microbial Communities Composition, Activity, and Dynamics at Salar de Huasco: A Polyextreme Environment in the Chilean Altiplano. In:  Microbial Ecosystems in Central Andes Extreme Environments. ME Farias (Ed). Springer, series: Cellular Origin, Life in Extreme Habitats and Astrobiology. doi: 10.1007/978-3-030-36192-1

Galgani F., Bruzaud S., Duflos G., Fabre P., Gastaldi E., Ghiglione J-F., Grimaud R., George M., Huvet A., Lagarde F., Paul-Pont I., ter Halle A. (2020) Pollution des océans par les plastiques et les microplastiques. Techniques de l’ingénieur.

 

 

13/01/21

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