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Laboratoire d'Océanographie Microbienne
UMR 7621

Publications 2015

  • Alcamán M.E., Fernandez C., Delgado A., Bergman B., Díez B (2015) The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat. ISME Journal 1–14 doi:10.1038/ismej.2015.63
  • Baltar F., J. Palovaara, F. Unrein, P. Catala, K. Horňák, K. Šimek, D. Vaqué, R. Massana, J.M. Gasol and J. Pinhassi. 2015. Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal. Advance online publication. doi: 10.1038/ismej.2015.135
  • Beier S., Gálvez M.J., Molina V., Sarthou G., Queroué F., Blain S., Obernosterer I. (2014) The transcriptional regulation of the glyoxylate cycle in SAR11 in response to iron fertilization in the Southern Ocean Environ. Microbriol. Rep. 7:427-434.
  • Blain S., J. Capparos, A. Guéneuguès, I. Obernosterer, L. Oriol (2015) Distributions and stoichiometry of dissolved nitrogen and phosphorus in the iron fertilized region near Kerguelen (Southern Ocean). Biogeosciences 12 : 623-635
  • Blanchet M., Pringaut O., Bouvy M., Catala P., Oriol L., Caparros J., Ortega E., Intertaglia L., West N., Agis M., Got P., Joux F.  (2015) Changes in bacterial community metabolism and composition during the degradation of dissolved organic matter from the jellyfish Aurelia aurita in a Mediterranean coastal lagoon. Environnmental Science and Pollution Research 22:13638-13653.
  • Blanchet M., Pringault O., Panagiotopoulos C., Lefèvre D., Charrière B., Ghiglione J-F., Fernandez C., Aparicio-Bernat Francisco L., Marrase C., Catala P., Oriol L., Caparros J., Joux F. (2015) When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition. Aquatic Science (accepted)
  • Botebol H, Lesuisse E, Sutak R, Six C, Lozano JC, Schatt P, Vergé V, Kirilovsky A, Morrissey J, Léger T, Camadro JC, Gueunegues A, Bowler C, Blain S, Bouget FY. (2015) A central role for ferritin in the day/night regulation of iron homeostasis in marine phytoplankton, Proc Natl Acad Sci U S A. 112:14652–14657
  • Bowie A.R. van der Merwe P., Quéroué F., Trull T., Fourquez M., Planchon F., Sarthou G., Chever F., Townsend A.T., Obernosterer I., Sallée J.-B., Blain S. (2015) Iron budgets for three distinct biogeochemical sites around the Kerguelen Archipelago (Southern Ocean) during the natural fertilisation study KEOPS-2. Biogeosciences 12: 4421-4445
  • Cavagna A.J., F. Fripiat, M. Elskens, P. Mangion, L. Chirurgien, I. Closset, M. Lasbleiz, L. Florez-Leiva, D. Cardinal, K. Leblanc, C. Fernandez, D. Lefèvre, L. Oriol, S. Blain, B. Quéguiner, F. Dehairs (2015) Production regime and associated N cycling in the vicinity of Kerguelen Island, Southern Ocean. Biogeosciences (accepted)


  • Céa B, Lefèvre D, Chirurgien L, Raimbault P, Garcia N, Charrière B, Grégori G, Ghiglione JF, Barani A, Lafont M, Van Wambeke (2015). An annual survey of bacterial production, respiration and ectoenzyme activity in coastal NW Mediterranean waters: temperature and resource controls. Environmental Science and Pollution Research 22:13654-13668.
  • Dehairs, F., Fripiatt F., Cavagna, AJ., Trull, T.W., Fernandez, C., Davies, D., Roukaerts, A., Fonseca Batista, D., Planchon, F., Elskens, M., (2015) Nitrogen cycling in the Southern Ocean Kerguelen Plateau area: evidence for significant surface nitrification from nitrate isotopic compositions. Biogeosciences 12, 1459-1482. doi:10.5194/bg-12-1459-2015.Díez B., M.E. Alcaman, C. Fernandez, A. Delgado, and B. Bergman (2015) The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat" ISME Journal (in press)
  • Díez B., M.E. Alcaman, C. Fernandez, A. Delgado, and B. Bergman (2015) The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat" ISME Journal (in press)
  • d'Ovidio F., A. Della Penna, T. W. Trull, F. Nencioli, M.-I. Pujol, M.-H. Rio, Y.-H. Park, C. Cotté, M. Zhou, S. Blain (2015) The biogeochemical structuring role of horizontal stirring: Lagrangian perspectives on iron delivery downstream of the Kerguelen Plateau. Biogeosciences 12: 5567-5581
  • Dumas C, Ludwig W, Aubert D, Eyrolle, F, Raimbault, P, Gueneugues A, and Sotin C. (2015)  Riverine transfer of anthropogenic and natural trace metals to the Gulf of Lions (NW Mediterranean Sea). Applied Geochemistry. 58 :14-25.


  • Farias L., Florez-LeivaL., Besoain V., Fernandez C. (2015) Dissolved greenhouse gases (nitrous oxide and methane) associated with the natural iron- fertilized Kerguelen region (KEOPS 2 cruise) in the Southern Ocean. Biogeosciences 12:1925-1940.
  • Faure D, Bonin P, Duran R et al. 2015. Environmental microbiology as a mosaic of explored ecosystems and issues. Environmental Science and Pollution Research DOI: 10.1007/s11356-015-5164-5
  • Fernandez C., M. L. Gonzalez, C. Munoz, V. Molina, L. Farias (2015) Temporal and spatial variability of biological nitrogen fixation off the upwelling system of central Chile (35– 38.58S). J. Geophys. Res. Oceans 120:3330–3349.
  • Fourquez M., I. Obernosterer, D. Davies, T. Trull, S. Blain (2015). Microbial iron uptake in the naturally fertilized waters in the vicinity of Kerguelen Islands: phytoplankton-bacteria interactions. Biogeosciences 12: 1893-1906
  • Fripiat F., Elskens M., Trull T.W., Blain S., Cavagna A.-J., Fernandez C., Fonseca-Batista D., Planchon F., Raimbault P., Roukaert A., Dehairs F. (2015) Significant mixed layer nitrification in a natural iron-fertilized bloom of the Southern Ocean. In press Global Biogeochemical Cycles.
  •  Galand P., Salter I., Kalenitchenko D. (2015) Ecosystem productivity is associated with bacterial phylogenetic distance in surface marine waters. Mol. Ecol. 24:5785-5795.
  • Gales A., V. Bru-Adan, J.-J. Godon, K. Delabre, P. Catala, A. Ponthieux, M. Chevallier, E. Birot, J.-P. Steyer, N. Wery. 2015. Predominance of single bacterial cells in composting bioaerosols. Atmos. Environ. 107:225-232
  • Ghiglione JF, Martin-Laurent F, Pesce S (2015) Microbial ecotoxicology: an emerging discipline facing contemporary environmental threats. Environmental Science and Pollution Research DOI: 10.1007/s11356-015-5763-1
  • Kopf A. …. Conan P., … Salter I. … (2015) The ocean sampling day consortium. Gigascience Jun 19;4:27
  • Landa M., Blain S., Christaki U., Monchy S., Obernosterer I. (2015) Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms ISME J. doi: 10.1038/ismej.2015.105
  • Laurenceau E.C., T.W. Trull, D.M. Davies, S.G. Bray, J. Doran, F. Planchon, F. Carlotti, M.-P. Jouandet, A.-J. Cavagna, A.M. Waite, S. Blain (2014) The relative importance of phytoplankton aggregates and zooplankton fecal pellets to carbon export: insights from free-drifting sediment trap deployments in naturally iron-fertilised waters near the Kerguelen plateau. Biogeosciences 11:1007-1027
  • Laurenceau, E. C. Trull, T.W., Davies D. M., De La Rocha C. L., Blain S.  (2014) Phytoplankton morphology controls on aggregation processes and marine snow sinking velocities in a naturally iron-fertilized area of the Southern Ocean. Marine Ecology Progress Series (in press).
  • Obernosterer I., M. Fourquez, S. Blain (2015) Fe and C co-limitation of heterotrophic bacteria in the naturally fertilized region off Kerguelen Islands. Biogeosciences 12: 1983-1992
  • Quéroué F., G. Sarthou, H. F. Planquette, E. Bucciarelli, F. Chever, P. van der Merwe, D. Lannuzel, A. T. Townsend, M. Cheize, S. Blain, F. d'Ovidio, and A. R. Bowie (2015) High variability in dissolved iron concentrations in the vicinity of the Kerguelen Islands (Southern Ocean). Biogeosciences 12: 3869-3883
  • Rembauville M., Blain S., Caparros J., Salter I. Particulate matter stoichiometry driven by microplankton community structure in summer the Indian sector of the Southern Ocean. Limnology and Oceanography (in revision).
  • Rembauville M., I. Salter, N. Leblond, A. Gueneugues, S. Blain (2015) Export fluxes in a naturally iron-fertilized area of the Southern Ocean – Part 1: Seasonal dynamics of particulate organic carbon export from a moored sediment trap. Biogeosciences 12: 3153-3170
  • Rembauville M., S. Blain, L. Armand, B. Quéguiner, I. Salter (2015) Export fluxes in a naturally iron-fertilized area of the Southern Ocean – Part 2: Importance of diatom resting spores and faecal pellets for export. Biogeosciences 12: 3171-3195
  • Sanial V., P. van Beek, B. Lansard, M. Souhaut, E. Kestenare, F. d'Ovidio, M. Zhou, S. Blain (2015) Use of Ra isotopes to deduce rapid transfer of sediment-derived inputs off Kerguelen. Biogeosciences 12: 1415-1430
  • Sauret C, Böttjer D, Talarmin A, Guigue C, Conan P, Pujo-Pay M, Ghiglione JF. (2014) Top-down control of diesel-degrading bacterial communities. Microbial Ecology 70:445-458.
  • Sauret C., Tedetti M., Guigue C., Dumas C., Lami R., Pujo-Pay M., Conan P., Goutx M., Ghiglione J-F. (2015) Influence of PAHs among other coastal environmental variables on total and PAH-degrading bacterial communities. Environmental Science and Pollution Research DOI 10.1007/s11356-015-4768-0Vásquez, P.; A. Llanos-Rivera; LR Castro, C. Fernández (2015) UV radiation effects on the embryos of anchoveta Engraulis ringens and common sardine Strangomera bentincki off Central Chile. Marine and Freshwater Research (in press)
  • Thommen Q., Pfeuty B., Schatt P., Bijoux A., Bouget F-Y., et al. (2015) Probing entrainment of Ostreococcus tauri circadian clock by green and blue light through a mathematical modeling approach. Frontiers in Genetics Feb 27:6:65
  • Tremblay L., J. Caparros, K. Leblanc, I. Obernosterer (2014) Origin and fate of particulate and dissolved organic matter in a naturally iron-fertilized region of the Southern Ocean. Biogeosciences. 12:607-621
  • Trull T. W., D. M. Davies, F. Dehairs, A-J Cavagna, M. Lasbleiz, E. C. Laurenceau, F. d’Ovidio, F. Planchon, K. Leblanc, B. Quéguiner, S. Blain (2015) Chemometric perspectives on plankton community responses to natural iron fertilization over and downstream of the Kerguelen plateau in the Southern Ocean. Biogeosciences 12:1029-1056


  • van der Merwe P., A. R. Bowie, F. Quéroué, L. Armand, S. Blain, F. Chever, D. Davies, F. Planchon, G. Sarthou, A. T. Townsend, T. Trull (2015) Sourcing the iron in the naturally fertilised bloom around the Kerguelen Plateau: particulate trace metal dynamics. Biogeosciences 12: 739-755
  • Vásquez, P., A. Llanos-Rivera, LR Castro, C. Fernandez (2015) UV radiation effects on the embryos of anchoveta Engraulis ringens and common sardine Strangomera bentincki off Central Chile. Marine and Freshwater Research.


Compte rendu congrès

  • Dussud C, Ghiglione JF (2014). Bacterial degradation of synthetic plastics. CIESM Monograph n°46 on Marine Litters pp. 43 - 48 [F. Briand, ed.] In Marine litter in the Mediterranean and Black Seas, 180 p., CIESM Publisher, Monaco.
  • Galgani F., Barnes D.K.A., Deudero S., Fossi M.C., Ghiglione J-F., Hema T., Jorissen F.J., Karapanagioti H.K., Katsanevakis S., Klasmeier J., von Moos N., Pedrotti M.L., Raddadi N., Sobral P., Zambianchi E. and F. Briand (2014) Executive Summary pp. 7 - 20 in CIESM Workshop Monograph n°46 [F. Briand, ed.] Marine litter in the Mediterranean and Black Seas, 180 p., CIESM Publisher, Monaco.


Le LOMIC en chiffres

6 Chercheurs CNRS
4 Enseignant-chercheurs
8 Personnels techniques
4 Post doctorants
8 Etudiants en thèse

4 Etudiants Master2