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Laboratoire d'Océanographie Microbienne
UMR 7621
Fil d'arianeAccueil / Publications du LOMIC / Publications 2018
Publications du LOMIC

Publications 2018

39 Publications

  1. Benavides M., K. Shoemaker, P.H. Moisander, J. Niggemann, T. Dittmar, S. Duhamel; O. Grosso, M. Pujo-Pay, S. Hélias-Nunige, A. Fumenia, S. Bonnet (2018) Aphotic N2 fixation along an oligotrophic to ultraoligotrophic transect in the western tropical South Pacific Ocean. Biogeosciences. 15:3107–3119. https://doi.org/10.5194/bg-15-3107-2018
  2. Blanchet M., Fernandez C., Joux F. (2018) Photoreactivity of riverine and phytoplanktonic dissolved organic matter and its effects on the marine bacterial growth and composition in Mediterranean Sea. Progr. Oceanogr. 163:82–93. https://doi.org/10.1016/j.pocean.2017.03.003
  3. Celussi M., Quero Grazia M., Zoccarato L., Franzo A., Corinaldesi C., Rastelli E., Lo Martire M., Galand P.E., Ghiglione J-F., Chiggiato J., Coluccelli A., Russo A., Pallavicini A., Fonda Umani S., Del Negro P., Luna G.M. (2018) Planktonic prokaryote and protist communities in a submarine canyon system in the Ligurian Sea (NW Mediterranean). Progr. Oceanogr. 168:210–221. https://doi.org/10.1016/j.pocean.2018.10.002
  4. Chapron L., Peru E., Engler A., Ghiglione J-F, Meistertzheim A-L., Pruski A.M., Purser A., Vétion G., Galand P.E., Lartaud F. (2018) Macro- and microplastics affect cold-water corals growth, feeding and behaviour. Sci. Rep. 8:15299. https://doi.org/10.1038/s41598-018-33683-6
  5. Conan P., P. Testor, C. Estournel, F. D’Ortenzio, M.  Pujo-Pay, X. Durrieu de Madron. (2018) Preface to the special section: Dense water formations in the North Western Mediterranean: from the physical forcings to the biogeochemical consequences. J. Geophys. Res. 123:6983–6995. https://doi.org/10.1029/2018JC014301
  6. Dadaglio L., J. Dinasquet, I. Obernosterer, F. Joux (2018) Differential responses of bacteria to diatom-derived dissolved organic matter in the Arctic Ocean. Aquat. Microb. Ecol. 82:59–72. DOI: https://doi.org/10.3354/ame01883
  7. Dinasquet J., E. Ortega-Retuerta, C. Lovejoy, I. Obernosterer. (2018) Editorial: Microbiology of the rapidly changing polar environments. Front. Mar. Sci. 5:154. Doi: 10.3389/fmars.2018.00154
  8. Dussud C., A. L. Meistertzheim, P. Conan, M. Pujo-Pay, M. George, P. Fabre, J. Coudane, P. Higgs, A. Elineau, M.L. Pedrotti, G. Gorsky, J.F.Ghiglione. (2018) Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters. Environ. Poll. 236:807–816. DOI: 10.1016/j.envpol.2017.12.027
  9. Dussud C., C. Hudec, M. George, P. Fabre, P. Higgs, S. Bruzaud, A-M. Delort, B Eyheraguibel, A-L. Meistertzheim, J. Jacquin, J. Cheng, N. Callac, C. Odobel, S. Rabouille, J-F. Ghiglione (2018) Colonization of non-biodegradable and biodegradable plastics by marine microorganisms. Front. Microbiol. 9:1571. https://doi.org/10.3389/fmicb.2018.01571
  10. Guyon J.B., Vergé V., Schatt P., Lozano J-C., Liennard M., Bouget F-Y. (2018). Comparative analysis of culture conditions for the optimization of carotenoids conditions in several strains of the picoeukaryote Ostreococcus. Mar. Drugs. 16:76. doi:10.3390/md16030076
  11. Henríquez-Castillo C.A., Botebol H., Mouton A., Ramírez-Flandes S., Lozano J-C., Lelandais G., Andrade S., Trefault N., De la Iglesia R., Bouget F-Y. (2018) Genetically engineered Ostreococcus tauri biosensors for copper pollution in coastal marine environments. Front. Environ. Sci. 6:22. doi.10.3389/fenvs.2018.00022
  12. Kessouri F., C. Ulses, C. Estournel, P. Marsaleix, F. D'Ortenzio, T. Severin, V. Taillandier, P. Conan (2018) Vertical mixing effects on phytoplankton dynamics and organic carbon export in the Western Mediterranean Sea. J. Geophys. Res. 123:1647–1669. https://doi.org/10.1002/2016JC012665
  13. Koedooder C., A. Guéneuguès, R. Van Geersdaële, V. Vergé, F.-Y. Bouget, Y. Labreuche, I. Obernosterer, S. Blain (2018) The role of the glyoxylate shunt in the acclimation to iron limitation in marine heterotrophic bacteria. Front. Mar. Sci. 5:435. doi: 10.3389/fmars.2018.00435
  14. Lambert S, Tragin M, Lozano JC, Ghiglione JF, Vaulot D, Bouget FY, Galand P. (2018) Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations. ISME J. 13:388–401. doi.org/10.1038/s41396-018-0281-z
  15. Landa M., Blain S., Harmand J., Monchy S., Rapaport A., Obernosterer I. (2018). Major changes in the composition of a Southern Ocean bacterial community in response to diatom-derived dissolved organic matter. FEMS Microbiol. Ecol. 94:fiy034. doi.org/10.1038/s41396-018-0281-z
  16. Leblanc K., Quéguiner B., Diaz F., Cornet V., Michel-Rodriguez M., Durrieu de Madron X., Bowler C., Malviya S., Thyssen M., Grégori G., Rembauville M., Grosso O., Poulain J., de Vargas C., Pujo-Pay M., Conan P. (2018) Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export. Nature Comm. 9:953. https://doi.org/10.1038/s41467-018-03376-9
  17. Lepiniec L., Devic M., Roscoe T.J., Bouyer D., Zhou D.X., Boulard C., Baud S., Dubreucq B. (2018) Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development. Plant Reprod. 31:291–307. https://doi.org/10.1007/s00497-018-0337-2
  18. Leroux R., G. Gregori, K. Leblanc, F. Carlotti, M. Thyssen, M. Dugenne, M. Pujo-Pay,  P. Conan, M.-P. Jouandet, N. Bhairy, L. Berline. (2018) Combining laser diffraction, flow cytometry and optical microscopy to characterize a nanophytoplankton bloom in the northwestern Mediterranean. Progr. Oceanogr. 163:248–259. https://doi.org/10.1016/j.pocean.2017.10.010
  19. Leroux R., G. Grégori, K. Leblanc, F. Carlotti, M. Thyssen, M. Dugenne, M. Pujo-Pay, P. Conan, M.-P. Jouandet, N. Bhairy, L. Berline (2018) Combining laser diffraction, flow cytometry and optical microscopy to characterize a nanophytoplankton bloom in the Northwestern Mediterranean. Prog. Oceanogr. 163:248–259. https://doi.org/10.1016/j.pocean.2017.10.010
  20. Liénart C., N. Savoye, V. David, P. Ramond, P. R. Tress, … J. Caparros,  … P. Conan, … M. Pujo-Pay et al. (2018) Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale. Prog. Oceanogr. 162:271–289. https://doi.org/10.1016/j.pocean.2018.02.026
  21. Mills M.M., Z.W. Brown, S.R. Laney, E. Ortega-Retuerta, K.E. Lowry, G.L. van Dijken, K.R. Arrigo (2018) Nitrogen limitation of the summer phytoplankton and heterotrophic prokaryote communities in the Chukchi Sea. Front. Mar. Sci. 5:362. https://doi.org/10.3389/fmars.2018.00362
  22. Molina V, Eissler Y, Cornejo M, Galand PE, Dorador C, Hengst M, Fernandez C, Francois JP (2018). Distribution of greenhouse gases in hyper-arid and arid areas of northern Chile and the contribution of the high altitude wetland microbiome (Salar de Huasco, Chile). Antonie van Leeuwenhoek. 111:1421–1432. doi: 10.1007/s10482-018-1078-9
  23. Molina V., Dorador C., Fernandez C., Bristow L., Eissler Y., Hengst M., Hernandez, K.,  Mork Olsen L., Harrod C., Marchant F., Anguita C., Cornejo M. (2018) The activity of nitrifying microorganisms in a high-altitude Andean wetland. FEMS Microbiol. Ecol. 94 fiy062. doi: 10.1093/femsec/fiy062
  24. Moutin T., T. Wagener, M. Caffin, A. Fumenia, A. Gimenez, M. Baklouti, P. Bouruet-Aubertot, M. Pujo-Pay, K. Leblanc, D. Lefèvre, S. Helias Nunige, N. Leblond, O. Grosso, A. de Verneil (2018) Nutrient availability and the ultimate control of the biological carbon pump in the western tropical South Pacific Ocean. Biogeosciences. 15:2961–2989. https://doi.org/10.5194/bg-15-2961-2018
  25. Ortega-Retuerta E., C. Marrasé, A. Muñoz-Fernández, M. M. Sala, R. Simó, J. M. Gasol. (2018) Seasonal dynamics of transparent exopolymer particles (TEP) and their drivers in the coastal NW Mediterranean Sea. Sci. Tot. Environ. 631–632:180-190. https://doi.org/10.1016/j.scitotenv.2018.02.341
  26. Paerl RW, Bertrand E, Schatt P, Mehiri, Niehaus TD, HansonAD, Riemann, Bouget F-Y (2018). Carboxylated thiazole: A newly recognized microbial micronutrient currency and, critical component of thiamin biosynthesis. Nature Sci. Rep. 8:8876. https://doi.org/10.1038/s41598-018-24321-2
  27. Rain-Franco A., Rojas C., Fernandez C. (2018) Potential effect of pesticides currently used in salmon farming on photo and chemoautotrophic carbon uptake in central – southern Chile. Aquaculture. 486:271–284. https://doi.org/10.1016/j.aquaculture.2017.12.048
  28. Rembauville M., Blain S., Manno C., Tarling G., Anu Thompson A., Wolff G.,  Salter I. (2018) The role of diatom resting spores in pelagic–benthic coupling in the Southern Ocean. Biogeosciences. 15:3071–3084  https://doi.org/10.5194/bg-15-3071-2018
  29. Salter I. (2018) Seasonal variability in the persistence of dissolved environmental DNA (eDNA) in a marine system: The role of microbial nutrient limitation. PLos ONE. 13:e0192409. https://doi.org/10.1371/journal.pone.0192409
  30. Sanhueza-Guevara S., Neira-Osses K., Rojas Cl., Geneviere A., Fernandez C. (2018) Effects of three pesticides used to control sea lice on the early development of Choromytilus chorus, Sphaerechinus granularis, and Paracentrotus lividus. Latin Am. J. Aquat. Res. 46:969-980. DOI:10.3856/vol46-issue5-fulltext-10
  31. Spungin D., N. Belkin, R. Foster, M. Stenegren, A. Caputo, M. Pujo-Pay, N. Leblond, C. Dupouy, S. Bonnet, I. Berman-Frank. (2018) Programmed cell death in diazotrophs and the fate of organic matter in the western tropical South Pacific Ocean during the OUTPACE cruise. Biogeosciences. 15:3893–3908. https://doi.org/10.5194/bg-15-3893-2018
  32. Tamborski J., Bejannin S., Garcia-Orellana J., Souhaut M., Charbonnier C., Anschutz P., Pujo-Pay M., Conan P., Crispi O., Monnin C., Stieglitz T., Rodellas V., Andrisoa A., Claude C., Van Beek P. (2018) A comparison between water recirculation and terrestrial-driven dissolved silica fluxes to the Mediterranean Sea traced using radium isotopes. Geochim. Cosmochim. Acta. 238:496–515. https://doi.org/10.1016/j.gca.2018.07.022
  33. Tenório M.M.B., Dupouy C., Rodier M., Neveux J. (2018) Trichodesmium and other planktonic cyanobacteria in New Caledonian waters (SW tropical Pacific) during an El Niño episode. Aquat. Microb. Ecol. 81:219–241. https://doi.org/10.3354/ame01873
  34. Testor, P., A. Bosse, L. Houpert, F. Margirier, L. Mortier, H. Legoff, D. Dausse, M. Labaste, J. Karstensen, D. Hayes, A. Olita, A. Ribotti, K. Schroeder, J. Chiggiato, R. Onken, E. Heslop, B. Mourre, F. D'ortenzio, N. Mayot, H. Lavigne, O.d. Fommervault, L. Coppola, L. Prieur, V. Taillandier, X.D.d. Madron, F. Bourrin, G. Many, P. Damien, C. Estournel, P. Marsaleix, I. Taupier‐Letage, P. Raimbault, R. Waldman, M.N. Bouin, H. Giordani, G. Caniaux, S. Somot, V. Ducrocq, P. Conan (2018) Multiscale Observations of Deep Convection in the Northwestern Mediterranean Sea during Winter 2012–2013 Using Multiple Platforms. J. Geophys. Res: Oceans. 123:1745–1776. doi:10.1002/2016JC012671
  35. Valdés V., F. Carlotti, R. Escribano, K. Donoso, M. Pagano, V. Molina, C. Fernandez (2018) Nitrogen and phosphorus recycling mediated by copepods and response of bacterioplankton community from three contrasting areas in the western tropical South Pacific (20°S). Biogeosciences. 15:6019–6032. doi:10.5194/bg-15-6019-2018.
  36. Valdés V., Fernandez C, Molina V., Escribano R., Joux F. (2018) Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community. Front. Mar. Sci. 4:343. doi: 10.3389/fmars.2017.00343
  37. Van Wambeke F., A. Gimenez, S. Duhamel, C. Dupouy, D. Lefevre, M. Pujo-Pay, T. Moutin (2018) Dynamics and controls of heterotrophic prokaryotic production in the western tropical South Pacific Ocean: links with diazotrophic and photosynthetic activity. Biogeosciences. 15:2669–2689. https://doi.org/10.5194/bg-15-2669-2018
  38. Zamanillo M., E. Ortega–Retuerta, S. Nunes, P. Rodríguez–Ros, M. Estrada, M. Montserrat Sala, R. Simó (2018) Main drivers of transparent exopolymer particle distribution across the surface Atlantic Ocean. Biogeosciences. 16:733–749. https://doi.org/10.5194/bg-16-733-2019
  39. Ziegler M, Quéré G, Ghiglione JF, Iwankow G, Barbe V, Wincker P, Planes S, Voolstra CR (2018) Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems. Mar. Poll. Bull. 129:392–398. DOI: 10.1016/j.marpolbul.2018.02.044

Science magazine

Conan, P. ,P. Testor, C. Estournel, F. D'Ortenzio, and X. Durrieu de Madron (2018) Observing winter mixing and spring bloom in the Mediterranean. EOS - Earth & Space Science News, Editors’. 99:1–8. doi.org/10.1029/2018EO105887

 

 

 

 

 

15/01/23

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