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Laboratoire d'Océanographie Microbienne
UMR 7621

Publications 2008

2008

 

Abboudi M, Jeffrey WH, Ghiglione JF, Pujo-Pay M, Oriol L, Sempéré R, Charrière B, Joux F Effects of photochemical transformations of dissolved organic matter on bacterial metabolism and diversity in three contrasting coastal sites in the Nothwestern Meditteranean Sea. Microb Ecol 55:344-357

 

 

Abboudi M, Matallana-Surget S, Rontani J-F, Sempéré R, Joux F (2008) Physiological alteration of the marine bacterium Vibrio angustum S14 exposed to simulated sunlight during growth. Curr Microbiol 57: 412-417.

 

 

Alain K, Intertaglia L, Catala P, Lebaron P Eudoraea adriatica gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae. Int J Syst Evol Microbiol 58:2275-2281

 

 

Alain K, Tindall BJ, Intertaglia L, Catala P, Lebaron P Hellea balneolensis gen. nov., sp. nov., a prosthecate alphaproteobacterium from the Mediterranean Sea. Int J Syst Evol Microbiol. 58:2511-2519

 

 

Béjà O,Suzuki MTPhotoheterotrophic Marine Prokaryotes, in Kirchman, D.L. ed. Microbial Ecology of the Oceans. p. 131-157.  Wiley, Hoboken, NJ. 2nd ed.

 

Belviso S, Bopp L, Mosseri J, Tedetti M, Garcia N, Griffiths B, Joux F, Obernosterer I, Uitz J, Veldhuis MJW (2008) Effect of natural iron fertilisation on the distribution of DMS and DMSP in the Indian sector of the Southern Ocean, Deep-Sea Research II 55: 893-900

 

 

Blain S, Bonnet S, Guieu C Dissolved iron distribution in the Southern eastern tropical and sub tropical Pacific. Biogeosciences, 5: 269-280

 

 

Blain S, Quéguiner B, Trull T a) The natural iron fertilization experiment KEOPS (KErguelen Ocean and Plateau compared Study): An overview. Deep Sea Research Part II: Topical Studies in Oceanography, 55(5-7): 559

 

 

 

Blain S, Sarthou G, Laan P b) Distribution of dissolved iron during the natural ironfertilization experiment KEOPS (Kerguelen Plateau, Southern Ocean). Deep Sea Research Part II: Topical Studies in Oceanography, 55(5-7):594

 

Bopp L, Aumont O, Belviso S, Blain S Modelling the effect of iron fertilization on dimethylsulphide emissions in the Southern Ocean. Deep Sea Research Part II: Topical Studies in Oceanography 55(5-7):901

 

Bourget N, Goutx M, Ghiglione JF, Pujo-Pay M, Mével G, Momzikoff A, Mousseau L, Guigue C, Garcia N, Raimbault P, Pete R, Oriol L, Lefèvre D Lipid biomarkers and bacterial lipase activities as indicators of organic matter and bacterial dynamics in contrasted regimes at the Dyfamed site, NW Mediterranean. Deep Sea Research II, doi:10.1016/j.dsr2.2008.11.034

 

 

Bowler C, Medlin LK, GrigorievV The Phaeodactylumgenome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes.  2008. Nature 456:239-244

 

 

Bruder K, Medlin LK Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). II. The genus Hippondonta.  Diatom Research 23:283-329

 

Bruder K, Medlin LK Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). III. Selected genera and families Diatom Research 23:331-347

 

Bruder K, Sato S, Medlin LK Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). IV. The genera Pinnularia and Caloneis.  Diatom 24:8-24

 

Chaabane H, Vuillet E, Joux F, Lantoine F, Conan P, Cooper J F, Coste C M  Photodegradation of sulcotrione in aquatic environments and toxicity of its photoproducts for some marine microorganisms. Water Research. 41:1781-1789

 

 

Christaki U, Obernosterer I, Van Wambeke F, Veldhuis M, Garcia N, Catala P Microbial Food Web Structure In A Naturally Iron Fertilized Area in the Southern Ocean (Kerguelen Plateau). Deep Sea Research Part II 55: 706-719

 

Claustre H, Huot Y, Obernosterer I, Gentili B, Tailliez D, Lewis M Gross community production and metabolic balance in the South Pacific Gyre, using a non-intrusive biooptical method. Biogeosciences 5:463-474

 

Conan P, Joux F, Torréton JP, Pujo-Pay M, Douki T, Rochelle-Newall E, Mari X Impact of solar ultraviolet radiation on bacterio- and phytoplankton activity in a large coral reef lagoon (SW New Caledonia). Aquatic Microbial Ecology 52: 83-98

 

Diaz F, Naudin JJ, Courties C, Rimmelin P, Oriol L Biogeochemical and ecological functioning of the low-salinity water lenses in the region of the Rhone River freshwater influence, NW Mediterranean Sea. Cont Shelf Res 28:1511– 1526

 

 

 

Diercks S, Metfies K, Medlin  LK Colorimetric detection of the toxic dinoflagellate Alexandrium minutum using sandwich hybridization in a microtiter plate assay, Harmful Algae 7:137-145

 

Diercks S, Metfies K, Medlin LK Molecular probes setsfor the detection of toxic algae for use in sandwich hybridization formats, J. Plankton Research, 30:439-448

 

Diercks S, Metfies K, Schröder F, Medlin LK, Colijn F Detection of phytoplankton with nucleic acid sensors, Algal Toxins: Nature, Occurrence, Effect and Detection. ed. by Valtere Evangelista, Laura Barsanti, Anna Maria Frassanito, Vincenzo Passarelli, Paolo Gualtieri: Springer Science + Business Media B.V, 285-299

 

Dircks  S, Metfies K, Jäckel S, Medlin LK Development and adaptation of a multiprobe biosensor for the use in a semi-automated device for the detection of toxic algae, Biosensors and Bioelectronics, 23: 1527-1533

 

 

Dupouy C, Neveux J, Dirberg G, Röttgers R, Tenorio MMB, Ouillon S Bio-optical properties of the marine cyanobacteria Trichodesmium spp. Journal of Applied Remote Sensing 2(023503):1-17

 

Fernández C, Thyssen M,  Denis M Microbial community structure along 18°W (39°N ˆ 45°N) in the NE Atlantic in late summer 2001(POMME program). Journal of Marine Systems 71:46-62

 

Gerringa LJA., Blain S, Laan P, Sarthou G, Veldhuis MJW, Brussaard CPD, Viollier E., Timmermans KR Fe-binding dissolved organic ligands near the Kerguelen Archipelago in the Southern Ocean (Indian sector). Deep Sea Research Part II: Topical Studies in Oceanography 55(5-7): 606

 

 

Gescher G, Metfies K, Frickenhaus S, Knelfelkamp B, Wiltshire K, Medlin LK Assessing community composition of Prasinophytes at the Helgoland Reede Sampling Site with a DNA-Microarray: a feasibility study. Applied and Environmental Microbiology 74:5305-5316

 

Gescher G, Metfies K, Medlin L.K The ALEX Chip – Development of a DNA chip for identification and monitoring of Alexandrium. Harmful Algae 7:485-494

 

Ghiglione JF, Palacios C, Marty JC, Mével G, Labrune C, Conan P, Pujo-Pay M, Garcia N, Goutx M Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW Mediterranean Sea. Biogeosciences 5:1751-1764

 

Henry A, Baudart J, Scherpereel G, Servais P, Lebaron P, Alloway C, Essemiani K, Delabre K Coliplage® an alternative method for the real time monitoring of E. coli numbers in bathing waters. Proceedings of AWWA-Water Quality Technology Conference, Cincinnati, USA, 16-20 November

 

 

Jacquet SHM, Dehairs F, Savoye N, Obernosterer I, Christaki U, Monnin, C., Cardinal D Mesopelagic organic carbon remineralization in the Kerguelen Plateau region tracked by biogenic particulate Ba. Deep Sea Research, Part II 55:868-879

 

 

Jouandet MP, Blain S, Metzl N, Brunet C, Trull T, Obernosterer I A seasonal carbon budget for a naturally-iron fertilized bloom over the Kerguelen Plateau in the Southern Ocean. Deep Sea Research, Part II 55:856-867

 

Kan J, Evans Se, Chen F, Suzuki MT Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay. Aquat Microbial Ecol 51:55-66

 

Lampitt R, Boorman B, Brown L, Lucas M, Salter I,Sanders R, Saw K, Seeyave S, Thomalla S, Turnewitsch R Particle export from the euphotic zone: Estimates using a novel drifting sediment trap, 234Th and new Production. Deep-Sea Research I, 55:1484-1502

 

 

Lampitt R., Salter I, Johns D Radiolarian as major exporters of organic carbon. Global Biogeochemical Cycles, 23, GB1010, doi:10.1029/2008GB003221

 

Lefèvre D, Guigue C, Obernosterer I The metabolic balance during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean (Kerguelen Plateau). Deep Sea Research, Part II, 55:766-776

 

 

Matallana-Surget S, Meador JA, Joux F, Douki T Effect of the GC content of DNA on the distribution of UVB-induced bipyrimidine photoproducts. Photobiogical Photochemical Science 7:794-801

 

Medlin L, Jung I,Bahulikar R, Mendgen K, Kroth P, Kooistra Wiebe HCF Evolution of the Diatoms.  VI. Assessment of the new genera in the araphids using molecular data.  Nova Hedwigia 133:81-100

 

Medlin LK Molecular clocks and inferring evolutionary milestones and biogeography in the microalgae. Origin and Evolution of Natural Diversity, Ed. By H. Okada, S.F. Mawatari, N. Suzuki, P. Gautam, pp. 31-42

 

Medlin LK, Sato S, Mann DG, Kooistra WCHF Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia and Toxarium within the bipolar centric diatoms (Mediophyceae, Bacillariophyta). Journal of Phycology 44:1340-1348

 

Metfies K, Borsutzki P, Gescher C, Medlin LK, Frickenhaus S PhylochipAnalyzer - A Program for Analysing Hierarchical Probe-Sets.  Molecular Ecology Research 8:99-102

 

 

Metfies K, Borsutzki P, Gescher C, Medlin LK, Frickenhaus S PhylochipAnalyzer - A Program for Analysing Hierarchical Probe-Sets.  Molecular Ecology Research 8:99-102

 

 

Metfies K, M edlin LK Feasibility of transferring FISH-probes to an 18S rRNA gene-Phylochip and a Mapping of Signal Intensities. Applied and Environmental Microbiology 74:2814–2821

 

 

 

Metfies K, Medlin LK Feasibility of transferring FISH-probes to an 18S rRNA gene-Phylochip and a Mapping of Signal Intensities. Applied and Environmental Microbiology, 74:2814–2821

 

Mével G, Vernet M, Ghiglione JF Short-term temporal variations of heterotrophic bacterial abundance and production in the open NW Mediterranean Sea. Biogeosciences, 5, 1573

 

 

Mevel G, Vernet M, Goutx M, Ghiglione JF Seasonal to hour variation scales in abundance and production of total and partie-attached bacteria in the open NW Mediterranean Sea (0-1000 m). Biogeosciences, 5 (6):1573-1586

 

Neveux J, Tenorio MMB Response to “another look at green Trichodesmium colonies” Limnol. Oceanogr. 53(5):2052-2055

 

 

Obernosterer I, Catala P, Lami R, Caparros J, Ras J, Bricaud A, Dupuy C, Van Wambeke F, Lebaron P Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean. Biogeosciences 5(3):693-705

 

Obernosterer I, Christaki U, Lefevre D, Catala P, Van Wambeke F, Lebaron P Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean. Deep-Sea Research Part Ii-Topical Studies in Oceanography 55:777-789

 

Ouillon S, Douillet P, Petrenko A, Neveux J, Dupouy C, Froidefond J.-M., Andréfouët S, Munoz-Caravaca A Optical algorithms and satellite wavelengths for total suspended matter in Tropical Coastal Waters Sensors 8:4165-4185

 

Palacios C, Zbinden M, Baco AR, Treude T, Smith CR, Gaill F, Lebaron P, Boetius A Microbial ecology of deep-sea sunken wood : quantitative measurements of bacterial biomass and cellulolytic activities. Cah Biol Mar 47:415-420

 

Ribalet F, Intertaglia L, Lebaron P, Casotti R Differential effect of three polyunsaturated aldehydes on marine bacterial isolates. Aquat Toxicol. 86(2):249-255

 

Sarthou G, Vincent D, Christaki U, Obernosterer I, Timmermans KR, Brussaard CPD The fate of biogenic iron during a phytoplankton bloom induced by natural fertilization: Impact of copepod grazing. Deep Sea Research, Part II, 55:734-751

 

 

Sato S, Kooistra WHCF, Watanabe T, Matsumoto S, Medlin LK A new araphid diatom genus Psammoneis gen. nov. (Plagiogrammaceae, Bacillariophyta) with three new species based on SSU and LSU rDNA sequence data and morphology. Phycologia 47:510-528

 

 

Sato S, Kuriyama K, Tadano T, Medlin LK Auxospore fine structure in a marine araphid diatom Tabularia parva (Bacillariophyta). Diatom Research 23:423-433

 

 

 

Sato S, Mann DG, Matsumoto S, Medlin LK Pseudostriatella pacifica gen. et sp. nov. (Bacillariophyta); a new araphid diatom genus and its fine-structure, auxospore and phylogeny. Phycologia 47:371-391 

 

Sato S, Mann DG, Nagumo T, Takaka J, Tadano T, Medlin LK Auxospore fine structure and variation in modes of cell size changes in Grammatophora marina (Bacillariophyta). Phycologia47:12-27

 

Sato S, Matsumoto S, Medlin LK Fine structure and 18S rDNA phylogeny of a marine araphid pennate diatom Plagiostriata goreensis gen. et sp. nov. (Bacillariophyta). Phycological Research 57:25-35

 

Sato S, Watanabe T, Crawford RM, Kooistra WHCF, Medlin LK Morphology of four plagiogrammacean diatoms; Dimeregramma minor var. nana, Neofragilaria nicobarica, Plagiogramma atomus and Psammogramma vigoensis gen. et sp. nov., and their phylogenetic relationship inferred from partial 28S rDNA. Phycological Research 56:255-268

 

 

Sato S., Mann DG, Nagumo T, Tanaka J, Tadano T, Medlin LK Auxospore fine structure and variation in modes of cell size changes in Grammatophora marina (Bacillariophyta). Phycologia 47:12-27

 

Tuija Mattson, Kortelainen P, Laubel A, Evans CD, Pujo-Pay M, Räike A, Conan P Export of DOM in relation to land use along a European climatic gradient. Science of The Total Environment, 407:1967-1976

 

Urios L, Agogué H, Intertaglia L, Lesongeur F, Lebaron P Melitea salexigens gen. nov., sp. nov., a gamma proteobacterium from the Mediterranean Sea. Int J Syst Evol Microbiol. 58:2479-2483

 

 

Urios L, Intertaglia L, Lesongeur F, Lebaron P Balneola alkaliphila sp. nov., a marine bacterium isolated from the Mediterranean Sea. Int J Syst Evol Microbiol. 58:1288-1291

 

 

Urios L, Intertaglia L, Lesongeur F, Lebaron P Haliea salexigens gen. nov., sp. nov., a member of the Gammaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol 58:1233-1237

 

Urios L, Michotey V, Intertaglia L, Lesongeur F, Lebaron P Nisaea denitrificans gen. nov., sp. nov. and Nisaea nitritireducens sp. nov., two novel members of the class Alphaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol 58:2336-2341

 

 

Van Wambeke F, Nedoma J, Duhamel S, Lebaron P Alkaline phosphatase activity of marine bacteria studied with ELF 97 substrate: success and limits in the P-limited Mediterranean Sea Aquat Microb Ecol. 52:245-251

 

Van Wambeke F, Obernosterer I, Moutin T, Duhamel S, Ulloa O, Claustre H Heterotrophic bacterial production in the South East Pacific: longitudinal trends and coupling with primary production. Biogeosciences 5:353-369

 

 

West NJ , Obernosterer I, Zemb O, Lebaron P Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean Environ Microbiol 10:738-756

 

Yutin N, Béjà O, Suzuki MT The use of denaturing gradient gel electrophoresis with fully degenerate pufM primers to monitor aerobic anoxygenic phototrophic assemblages. Limnol. Oceanogr Methods. 6:427-440

 

Zemb O, Urios L, Coetsier C, Lebaron P Efficient method to isolate and purify viruses of bacteria from marine environments. Lett Appl Microbiol. 47:41-45

 

 

 

 

27/01/20

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