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Laboratoire d'Océanographie Microbienne
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Fil d'arianeAccueil / Publications du LOMIC / Publications 2010
Publications du LOMIC

Publications 2010

 58 publications

  1. Alain K, Tindall B, Catala P, Intertaglia L, Lebaron P (2010) Ekhina lutea gen. nov., sp nov. a member of the phylum Bacteroidetes isolated from the South East Pacific Ocean. International Journal of  Systematic and Evolutionary Microbiology, 60:2972-2978
  2. Baudart J, Lebaron P (2010) Rapid detection of Escherichia coli in waters using fluorescent in situ hybridization, direct viable counting and solid phase cytometry. Journal of Applied Microbiology, 109:1253-1264
  3. Bodaker I, Sharon I, Suzuki M T, Feingersch R, Shmoish M, Andreishcheva E, Sogin M L, Rosenberg M, Maguire M E, Belkin S, Oren A, Beja O (2010) Comparative community genomics in the Dead Sea : an increasingly extreme environment. ISME Journal, 4(3):399-407
  4. Chever F, Sarthou G, Bucciarelli E, Blain S, Bowie AR (2010) An iron budget during the natural iron fertilisation experiment KEOPS (Kerguelen Islands, Southern Ocean). Biogeosciences, 7(2):455-468
  5. Christodoulou S, Joux F, Marty JC, Sempéré R, Rontani JF (2010) Comparative study of UV and visible light induced degradation of lipids in non-axenic senescent cells of Emiliania huxleyi. Marine Chemistry 119:139-152 (IF:2.726)
  6. Cock JM, Tessmar-Raible K, Boyen C, Viard F, Carvalho GR, Creer S, Allen MJ, Costa FO, Tsigenopoulos  CS, Le Goff-Vitry M, Magoulas A, Medlin L, Metfies K (2010) Genomics in the Discovery and Monitoring of Marine Biodiversity. In: Introduction to Marine Genomics, Vol 1. Springer Netherlands, p 1-32
  7. Corellou F, Schwartz C, Motta JP, Djouani El B,  Sanchez F, Bouget FY (2010) Novel plant clocks and higher plants: Comparative functional analysis of the circadian architecture in green microalga Ostreococcus (revised version submitted to Plant Cell)
  8. Delille D, Pelletier E, Duval A, Rodríguez-Blanco A, Ghiglione J-F (2010) Effects of nutrient and temperature on degradation of petroleum hydrocarbons in subAntarctic seawater. Pol Biol (In press) (DOI 10.1007/s00300-009-0652-z)
  9. Diercks S, Gescher C, Metfies K, Medlin LK (2010) Evaluation of LNAs (Locked nucleic acids) for signal enhancement of oligonucleotide probes for microalgae immobilized on solid surfaces.  Journal of Applied Phycology, 22:813
  10. Diercks S, Metfies K, Medlin LK (2010) Electrochemical detection of toxic algae with a biosensor. IOC Manuals and Guides 50:67-76
  11. Djouani-Tahri el B, Motta J P, Bouget  FY, Corellou F (2010) Insights into the regulation of the core clock component TOC1 in the green picoeukaryote Ostreococcus. Plant Signal Behav 5: 332-335
  12. Dupouy C, Neveux J, Ouillon S, Frouin R, Murakami H, Hochard S, Dirberg G (2010) Inherent optical properties and satellite retrieval of chlorophyll concentration in the lagoon and open ocean waters of New Caledonia. Marine Pollution Bulletin 61:503-518 (IF: 2.63)
  13. Feingersch R, M.T. Suzuki M T, Shmoish M, Sharon I, Sabehi G, Partensky F, Béjà O (2010) Microbial community genomics in eastern Mediterranean Sea surface waters. ISME J 4:78-87
  14. Gaebler-Schwarz S, Davidson a, Assmy P, Chen J X, Henjes J, Nothig E M, Lunau M, Medlin L K (2010) A new cell stage in the haploid-diploid life cycle of the colony-forming haptophyte phaeocystis antarctica and its ecological implications 1. Journal of Phycology, 46(5): 1006-1016
  15. Gescher G, Metfies K, Medlin LK (2010) Microarray hybridization for quantification of microalgae Manual and Guides: Microscopic and molecular methods for quantitative phytoplankton analysis, ICES manual
  16. Guieu C, Dulac F, Desboeufs K, Wagener T, Pulido-Villena E, Grisoni J, Louis F, Ridame C, Blain S, Brunet C, Bon Nguyen E, Tran S, Labiadh M, Dominici J (2010) Large clean mesocosms and simulated dust deposition: a new methodology to investigate responses of marine oligotrophic ecosystems to atmospheric inputs. Biogeosciences 7:2765-2784 (IF: 3.25)
  17. Guillebault D, Laghdass M, Catala P, Obernosterer I and  P Lebaron (2010) Improved method of bacterial cell capture after flow cytometry cell sorting. Appl. Env. Microbiol. 76: 7352-7355 (IF: 3.69)
  18. Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget FY, Bowler C (2010) Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes. Plant Cell Environ 33 (10): 1614-1626
  19. John U, Beszteri S, Glockner G, Singh R, Medlin L, Cembella A (2010) Genomic characterization of the ichtyotoxic prymnesiophyte Chrysochromulina polylepis and the expression of polyketide synthase genes in synchronized cultures. European Journal of Phycology, 45:215-229
  20. Joux F, Bertrand JC, De Wit R, Grossi V, Intertaglia L, Lebaron P, Michotey V, Normand P, Peyret P, Raimbault P, Tamburini C, Urios L (2010) Méthodes d’étude des micro-organismes dans l’environnement. In: Ecologie microbienne. J-C Bertrand, P Caumette, P Lebaron, P Normand (eds). Presses Universitaires de Pau
  21. Kaczmarska I, Medlin L K Reply to comment by Theriot (2008) on Kaczmarska et al. (2006) (vol 45, pg 987, 2009). Journal of Phycology, 46(5):1059
  22. Laghdass M, West NJ, Batailler N, Caparros J, Catala P, Lantoine F, Oriol L, Lebaron P and I Obernosterer (2010) Impact of lower salinity water masses on bacterial heterotrophic production and community structure in the offshore NW Mediterranean Sea. EMIR. 2: 761-769
  23. Lampitt R, Salter I, de Cuevas BA, Hartman S, Larkin KE, Pebody C (2010) Long-term variability of downward particle flux in the deep Northeast Atlantic: causes and trends. Deep-Sea Research II: Tropical Studies in Oceanography 57 (15): 1346-1351 (IF: 1.97)
  24. Lamy D, De Carvalho-Maalouf P, Cottrell M T, Lami R, Catala P, Oriol L, Caparros J, Ras J, Kirchman D L,  Lebaron P (2010) Seasonal dynamics of aerobic anoxygenic phototrophs in a Mediterranean coastal lagoon. Aquat. Microb. Ecol. doi: 10.3354/ame01467 (IF: 1.97) (in press)
  25. Lozano JC, Schatt P, Verge V, Gobinet J, Villey V, Peaucellier G  (2010) CDK5 is present in sea urchin and starfish eggs and embryos and can interact with p35, cyclin E and cyclin B3. Mol Reprod Dev 77, 449-461
  26. Matallana-Surget S, Douki T, Meador J, Cavicchioli R, Joux F (2010) Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation. Journal of Photochemistry and Photobiology: B Biology 100: 51-56 (IF: 1.871)
  27. Matallana-Surget S, Joux F, Raftery M, Cavicchioli R (2010) The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics. Environmental Microbiology (in press)
  28. Medlin LK (2010) Pursuit of a natural classification of diatoms:  an incorrect comparion of published data. European Journal of Phycology 45:155-166
  29. Medlin LK, Diercks S, Bezsteri S (2010) Probes for detecting Prymnesium parvum and preliminary results from gene expression studies.  Journal of the American Water Resources Association 46: 144-152
  30. Medlin L K, Kaczmarska I (2010) Letter to the editor correctly assigning original discoveries to original authors (vol 50, pg 407, 2009). Molecular Phylogenetics and Evolution, 57(2):959
  31. Medlin L, Kooistra WHCF Methods to estimate the diversity in the marine photosynthetic protist community with illustrations from case studies : a review. Diversity, 2:973-1014
  32. Medlin L K, Sato S (2010) The use of the terms centrics and pennates Diatom Research (vol 24, pg 499, 2009). Diatom Research 25(2):461
  33. Medlin L K, Schmidt K Molecular probes improve the taxonomic resolution of cryptophyte abundance in Arcachon Bay, France. Vie et Milieu, 60(1):9-15
  34. Medlin L K, Strieben S (2010) Refining cryptophyte identification : matching cell fixation methods to fish hybridisation of cryptomonads. Journal of Applied Phycology, 22(6):725-731
  35. Metfies K, Gescher C, Frickenhaus S, Niestroy R, Wichels A, Gerdts G, Knefelkamp B, Wiltshire K, Medlin L (2010) Contribution of the class cryptophyceae to phytoplankton structure in the german bight. Journal of Phycology, 46(6):1152-1160
  36. Monnier A, Liverani S, Bouvet R, Jesson B, Smith JQ, Mosser J, Corellou F, Bouget FY (2010) Genome wide rhythmic transcription under light/dark cycles is associated with sequential transcription of specific biological processes genes in the marine picoeukaryote Ostreococcus tauri BMC Genomics 11, 192
  37. Moulager M, Corellou F, Escande ML, Bouget FY (2010) Light intensity- and day time-dependent signals regulate cell cycle progression through differential regulations of the Retinoblastoma pathway in the microalga Ostreococcus PloS Genet 6, e1000957
  38. Morant PE, Thommen Q, Pfeuty B, Vandermoere C, Corellou F, Bouget FY, Lefranc M (2010) A robust two-gene oscillator at the core of Ostreococcus tauri circadian clock. Chaos 20 (in press)
  39. Neveux J, Lefebvre JP, Le Gendre R,  Dupouy C, Gallois F, Courties C, Gérard P, Fernandez JM,  Ouillon S (2010) Phytoplankton dynamics in New-Caledonian lagoon during a southeast trade winds event. Journal of Marine Systems, 82: 230-244 (IF: 2.24)
  40. Neveux J, Seppäla J, Dandonneau Y (2010) Multivariate analysis of extracted pigments using spectrophotometric and spectrofluorometric methods. Dans phytoplankton pigments in oceanography, vol. 2, SCOR UNESCO éditeurs, Cambridge University Press (in press)
  41. Obernosterer I, Lami R, Larcher M, Batailler N, Catala P, Lebaron P (2010) Linkage between bacterial carbon processing and the structure of the active bacterial community at a coastal site in the NW Mediterranean Sea. Microb Ecol 59: 428-435 (IF: 3.25)
  42. Ortega-Retuerta E, Siegel DA, Nelson NM, Reche I, and Duarte CM (2010) Observations of chromophoric dissolved and detrital organic matter distribution using remote sensing in the Southern Ocean: Validation, dynamics and regulation. Journal of Marine Systems 82: 295-303 (IF: 2.24)
  43. Ortega-Retuerta E,  Reche I,  Duarte CM  (2010) Significance of bacterial activity for the distribution and dynamics of transparent exopolymer particles in the Mediterranean Sea. Microbial Ecology 59: 808-818 (IF: 3.25)
  44. Ortega-Retuerta E, Reche I,Pulido-Villena E, Agustí S, Duarte CM (2010) Distribution and photoreactivity of chromophoric dissolved organic matter in the Antarctic Peninsula (Southern Ocean). Marine Chemistry 118: 129-139 (IF: 2.73)
  45. Ory P, Hartmann H J, Jude F, Dupuy C, Del Amo Y, Catala P, Mornet F, Huet V, Jan B, Vincent D, Sautour B, Montanie H (2010) Pelagic food web patterns : do they modulate virus and nanoflagellate effects on picoplankton during the phytoplankton spring bloom ? Environmental Microbiology, 12(10):2755-2772
  46. Parthuisot N, West N, Lebaron P, Baudart J (2010) High diversity and abundance of Legionella spp. in a pristine river and the impact of seasonal and anthropogenic effects. Appl. Environ. Microbiol. 76: 8201-8210
  47. Rodríguez-Blanco A, Vetion G, Escande ML, Delille D, Ghiglione JF (2010) Gallaecimonas pentaromativorans gen. nov., sp. nov., a novel bacterium carrying 16S rDNA heterogeneity able to degrade high-molecular-weigh polycyclic aromatic hydrocarbons. International Journal of Systematic and Evolutionary Microbiology 60: 504-509 (IF: 2.113)
  48. Rodríguez-Blanco A, Antoine V, Pelletier E, Delille D, Ghiglione JF (2010) Effects of temperature and fertilization on total vs. active bacterial communities exposed to crude and diesel oil pollution in NW Mediterranean Sea. Environmental pollution, 158: 663–673 (IF: 3.426)
  49. Robinson C, Steinberg DK, Anderson TR, Aristegui J, Carlson CA, Frost JR, Ghiglione JF, Robison BH, Tamburini C, Tanaka T, Wishner KF, Zhang J (2010) Mesopelagic zone ecology and biogeochemistry – a synthesis. Deep Sea Research Part II: Topical Studies in Oceanography, 57 (16) :1504-1518 (IF: 1.97)
  50. Salter I, Lampitt R, Kemp A, Gledhill M. (2010) The association between biogenic and inorganic minerals and the amino acid composition of settling particles. Limnol. Ocean. 55: 2207-2218 (IF: 3.545)
  51. Tanaka T,  Thingstad F, Christaki U , Colombet J, Cornet-Barthaux V, Courties C, Grattepanche JD, Lagaria A, Nedoma J, Oriol L, Psarra S, Pujo-Pay M, and F Van Wambeke (2010) N-limited or N and P co-limited indications in the surface waters of three Mediterranean basins. Biogeosciences 7, 8143-817
  52. Thomen Q, Morant P, Corellou F, Vandermoëre C, Bouget FY (2010) Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus. PloS Comp Biol 6
  53. Troein C, Corellou F, Dixon L, Van Ooijen G, O'Neill J. Bouget FY, Millar A (2010) Multiple light inputs to a simple clock circuit allow complex biological rhythms. Plan J (accepted)
  54. Urios L, Michotey V, Intertaglia L, Lesongeur  F, Lebaron P (2010) Thalassobaculum salexigens sp. nov., a new member of the family Rhodospirillaceae from the NW Mediterranean Sea, and emended description of the genus Thalassobaculum. International Journal of Systematic and Evolutionary Microbiology, 60:209-213
  55. Vaughan P, Bullock A, Joux F, Jeffrey WH (2010) Stability of 3H-thymidine and 3H-leucine upon UVR exposure during bacterioplankton production measurements. Limnology Oceanography Methods 8: 562-566 (IF: 1.737)
  56. De Vicente I, Ortega-Retuerta  E, Perez-Mazuecos I, Pace ML., Cole JJ, Reche I (2010) Variation in transparent exopolymer particles in relation to biological and chemical factors in two contrasting lake districts. Aquatic Sciences 72:443-453 (IF:2.045)
  57. Williams T, Joux F, Lauro FM, Matallana-Surget S, Cavicchioli R (2010) Physiology of marine oligotrophic ultramicrobacteria. In: Extremophiles handbook. K Horikoshi, G Antranikian, F Robb, K Stetter, AT Bull (eds). Springer (in press)
  58. Zemb O, West N, Bourrain M, Godon J J, Lebaron P (2010) Effect of a transient perturbation on marine bacterial communities with contrasting history. Journal of Applied Microbiology, 109(3):751-762

 

Frédérique Sanz - 13/12/18

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