Publications 2012

20 publications

1. Arrigo KR, Perovich DK, Pickart RS, Brown ZW, van Dijken GL, Lowry KE, Mills MM, Palmer MA, Balch WM, Bahr F, Bates NR, Benitez-Nelson C, Bowler B, Brownlee E, Ehn JK, Frey KE, Garley R, Laney SR, Lubelczyk L, Mathis J, Matsuoka A, Mitchell BG, Moore GWK, Ortega-Retuerta E, Pal S, Polashenski CM, Reynolds RA, Schieber B, Sosik HM, Stephens M, Swift JH. (2012) Massive Phytoplankton Blooms Under Arctic Sea Ice. Science 336:1408
2. Ciobanu MC, Rabineau M, Droz L, Révillon S, Ghiglione JF, Dennielou B, Jorry SJ, Kallmeyer J, Etoubleau J, Pignet P, Crassous P, Laugier J, Guégan M, Godfroy A, and Alain K (2012) Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments. Biogeosciences 9:3491-3512.
3. Domaizon I, Lepère C, Debroas D, Ghiglione JF, Jacquet S, Bouvy M, Bettarel Y, Bouvier C, Torréton JP, Vidussi F, Mostajir B, Kirkham A, LeFloch E, Fouilland E, Montanié H and Bouvier T (2012) Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. BMC Microbiology 12:202
4. Fernandez C, Farías L. (2012) Assimilation and regeneration of inorganic nitrogen in the coastal upwelling system: ammonium and nitrate utilization. Mar. Ecol. Prog. Ser. 451 : 1-14.
5. Fourquez, M., I. Obernosterer and S. Blain (2012) A method for the use of the radiotracer 55Fe for microautoradiography and CARD-FISH of natural bacterial communities. FEMS Microbiol Lett. DOI: 10.1111/1574-6968.12022
6. Galand P. E., M. Bourrain, E. De Maistre, P. Catala, Y. Desdevises, H. Elifantz, D. L. Kirchman, P. Lebaron (2012) Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified lagoon, the Clipperton atoll (N Pacific). FEMS Microbiol Ecol : 203-217
7. Ghiglione JF, Galand PE, Pommier T, Pedrós-Alió C, Maas EW, Bakker K, Bertilson S, Kirchman DL, Lovejoy C, Yager PL, Murray AE (2012). Pole to pole biogeography of surface and deep marine bacterial communities. PNAS 109 :17633-17638
8. Grimaud R, Ghiglione JF, Cagnon C, Lauga B, Vaysse PJ, Rodriguez-Blanco A, Mangenot S, Cruveiller S, Barbe V, Duran R, Wu LF, Talla E, Bonin P, and Michotey V (2012) Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17 which forms biofilms on hydrophobic organic compounds Journal of Bacteriology194:3539-40.
9. Laghdass M., P. Catala, J. Caparros, L. Oriol, P. Lebaron and I. Obernosterer (2012) High contribution of SAR11 to microbial activity in the North West Mediterranean Sea. Microb. Ecol. 63: 324-333
10. Marty F, Ghiglione JF, Paisse S, Gueuné H, Quillet L, van Loosdrechta MCM and Muyzer G (2012) Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corroded carbon steel. Biofouling 28:363-380
11. Matallana-Surget S., Joux F., Wattiez R., Lebaron P. (2012) Proteome analysis of the UVB-resistant marine bacterium, Photobacterium angustum S14. PlosOne 7(8): e42299. doi:10.1371/journal.pone.0042299
12. Matallana-Surget S., Villette C., Intertaglia L., Joux F., Lebaron P. (2012) Response to UVB radiation and oxidative stress of marine bacteria isolated from South Pacific Ocean and Mediterranean Sea. Journal of Photochemistry and Photobiology B : Biology 117:254–261
13. Morales C E, Hormazabal S, Correa-Ramirez M, Pizarro O, Silva N, Fernandez C, Anabalón V, Loreto Torreblanca M (2012) Mesoscale variability and nutrient-phytoplankton distributions off central-southern Chile during the upwelling season: the influence of mesocale eddies, Progress in Oceanography, doi: http://dx.doi.org/10.1016/j.pocean.2012.04.015
14. Ortega-Retuerta E, Jeffrey W H, Babin M, Bélanger S, Benner R, Marie D, Matsuoka A, Raimbault P, Joux F Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin. Biogeosciences 9:3679-3692
15. Ortega-Retuerta E, Jeffrey WH, Ghiglione JF, Joux F (2012) Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer. Polar Biology 35: 785-794.
16. Rain A., Muñoz C., Fernandez C (2012) Abiotic ammonification and gross ammonium photoproduction in the upwelling system off central Chile (36°S). Biogeosciences 9:18479-18518; doi:10.5194/bgd-9-18479-2012
17. Salter, I., Kemp, A.E.S., Moore, C.M., Lampitt R., Wolff, G.A., Holtvoeth, J (2012). Diatom resting spore ecology drives enhanced carbon export from a naturally iron fertilized bloom in the Southern Ocean. Global Biogeochemical Cycles, Volume 26, DOI: 10.1029/2010GB003977
18. Sauret C, Christaki U, Moutsaki P, Hatzianestis I, Gogou A,  Ghiglione JF (2012) Influence of pollution history on the response of coastal bacterial and nanoeukaryote communities to crude oil and biostimulation assays. Marine Environmental Research 79: 70-78.
19. Toulza E., Tagliabue A., Blain S., Piganeau G., Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes, PLoS ONE 7(2): e30931. doi:10.1371/journal.pone.0030931.
20. Xing X, Claustre, H., Blain S., D’Ortenzio F., Antoine D., Ras J.,  Guinet, C. (2012) Quenching correction for in vivo chlorophyll fluorescence acquired by autonomous platforms: A case study with instrumented elephant seals in the Kerguelen region (Southern Ocean) Limnol Oceanogr Methods 10, 483–495. I.F. 2.010

Matallana-Surget S, Joux F, Wattiez R, Lebaron P (2012) Proteome Analysis of the UVB-Resistant Marine Bacterium Photobacterium angustum S14. Plos One 7(8) e42299

Bodaker I, Suzuki MT, Oren A, Béjà O (2012) Dead Sea rhodopsins revisited. Environmental Microbiology Reports 4:617-621

Matallana-Surget S, Villette C, Intertaglia L, Joux F, Bourrain M, Lebaron P (2012b) Response to UVB radiation and oxidative stress of marine bacteria isolated from South Pacific Ocean and Mediterranean Sea. Journal of Photochemistry and Photobiology B: Biology 117:254-261

Ebenezer V, Medlin LK, Ki JS (2012) Molecular Detection, Quantification, and Diversity Evaluation of Microalgae. Marine Biotechnology 14:129-142

Laghdass M, Catala P, Caparros J, Oriol L, Lebaron P, Obernosterer I (2012) High Contribution of SAR11 to Microbial Activity in the North West Mediterranean Sea. Microbial Ecology 63:324-333

Medlin L, Yang I, Sato S (2012) Evolution of the Diatoms. VII. Four gene phylogeny assesses the validity of selected araphid genera. Nova Hedwigia Beifeft 141:505-514.

Leroy B, Houyoux N, Matallana-Surget S, Wattiez R (2012) Gel-Free Proteome Analysis Isotopic Labelling Vs. Label-Free Approaches for Quantitative Proteomics. In: (Ed.) DH-CL (ed) Integrative Proteomics. InTech Available from: http://www.intechopen.com/books/integrative-proteomics/gel-free-proteome-analysis-isotopic-labelling-vs-label-free-approaches-for-quantitative-proteomics

Orozco, J and Medlin, LK (2012). Electrochemical detection of harmful algae using a sandwich hybridization assay on an electrode surface. In: Tiquia-Arashiro, S. (ed) Molecular Biological Technologies for Ocean Sensing. Springer Protocols Handbooks series, Humana Press, in press.

Bertrand J-C, Caumette P, Lebaron P, Normand P (2012) Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés, 1st edn. Les Presses Universitaires de l'Université de Pau et des Pays de l'Adou, Pau

Bertrand J-C, Caumette P, Lebaron P, Normand P (2012) Les Champs Thématiques de L'Ecologie Microbienne. In: Bertrand J-C, Caumette P, Lebaron P, Normand P (eds) Écologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés. Les Presses Universitaires de l'Université de Pau et des Pays de l'Adou, Pay, p 3-9

Joux F, Bertrand J-C, Wit RD, Grossi V, Laurent Intertaglia, Lebaron P, Michotey V, Normand P, Peyret P, Patrick Raimbault, Tamburini C, Urios L (2012) Méthodes d'Études des Micro-Organismes Dans L'environnement. In: Bertrand J-C, Caumette P, Lebaron P, Normand P (eds) Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés. Les Presses Universitaires de l'Université de Pau et des Pays de l'Adou, Pau, p 799-869

Lebaron P, Cournoyer B, Lemarchand K, Nazaret S, Servais P (2012) Environnement et Micro-organismes Pathogènes de L'homme. In: Bertrand J-C, Caumette P, Lebaron P, Normand P (eds) Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés. Les Presses Universitaires de l'Université de Pau et des Pays de l'Adou, Pau, p 659-701

Mock, T., & Medlin, L. K., (2012). Genomics and Genetics of Diatoms. In G. Piganeau (Ed.), Genomic Insights into the Biology of Algae. pp. 245-284.

Eikrem W, Edvardsen B, Saez A, Medlin LK (2012) Revision of the haptophyte family Prymnesiaceae, with a resurrection of the genus Chrysocampanula and three new genera. Eur J Phycol in press

Medlin LK, Kooistra W, Graneli E, Reugera B, McCoy G, Edvardsen B, Lewis J, Elliott C, Pazos Y, Maranda L (2012) MIDTAL (Microarrays for the Detection of Toxic Algae). Phytotaxa:in press

Gaebler-Schwarz, S., B. Beszteri, J. S. Gindulis, F. Hinz, E.-M. Nöthig, C. Wesche, G. O. Kirst, and Medlin LK (2012). Responses of Different Antarctic Genotypes of Phaeocystis antarctica to three salinities: Evidence for Ecosystem Resilience. Marine Ecology-Progress Series, in press.

Orozco J, Töbe K, Medin LK (2012) Assessment of three methods for a faster and reliable monitoring of toxic algae. In: Guarini J, Lagadeaux Y (eds) Sensors in ecology: advanced tools for a technological revolution. CNRS Editions, Paris, p in press

Medlin LK, Cembella A (2012) Biodiversity of Harmful Algae. In: Karl D (ed) Encyclopedia of Biodiversity. Springer, p in press

Medlin L.K, and Fensome, R. 2012. Dinoflagellate macroevolution: an integration of molecular, morphological and fossil evidence. Journal of the Geological Society, in press.

Medlin L.K. 2012. Dinoflagellate microevolution: a comparison of species and population evidence Journal of the Geological Society, in press

Taylor, J.D., Berzano, M., Lewis, J. and Medlin, L.K. 2012. Preliminary results of the MIDTAL project: a microarray chip to monitor toxic dinoflagellates in the Orkney Islands, UK. Journal of the Geological Society, in press.

Medlin, L.K. and Jungclaus, M. 2012 Artificial Neural Networks contribute to the identification of cryptomonad taxa. Vie et Milieu, in press.