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Laboratoire d'Océanographie Microbienne
UMR 7621

Publications 2014

24 publications

  1. Besaury L, Ghiglione JF, Quillet L (2014) Abundance, activity and diversity of archaeal and bacterial communities in both uncontaminated and highly copper-contaminated marine sediments. Marine Biotechnology 16:230-242
  2. Blanc−Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré IA, Château A, Eyre−Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, van de Peer Y and Piganeau G. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics 15:1103
  3. Botebol H, Sutak R, Blaiseau PL, Bouget FY, Camadro JM, Lesuisse E (2014). Different iron sources to study thephysiology and biochemistry of iron metabolism in marine micro-algae. Biometals 27:75-88.
  4. Bouget FY, Lefranc M, Thommen Q, Pfeuty B, Lozano JC, Schatt P, Botebol H, Vergé V (2014). Transcriptional versus non-transcriptional clocks: A case study in Ostreococcus. Mar Genomics 14:17-22
  5. Christaki U., D. Lefèvre, C. Georges, J. Colombet, P. Catala, C. Courties, T. Sime-Ngando, S. Blain, I. Obernosterer (2014) Microbial food web dynamics during spring phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean). Biogeosciences Discuss. 11:6985-7028
  6. Doberva M., Ferandin Y., Intertaglia L., Joux F., Lebaron P., Lami R. (2014) Draft Genome Sequence of Maribius MOLA 401, a marine bacteria with a quorum sensing cell dependent physiology. Genome Annoucements. 2:no. 5 e00997-14 
  7. Fourquez M., Devez A., Schaumann A., Gueneugues A., Jouenne T., Obernosterer I., S. Blain (2014).  Effects of iron limitation on growth and carbon metabolism in oceanic and coastal heterotrophic bacteria. Limnol Oceanogr 59: 349-360
  8. Ghiglione JF, Martin-Laurent F, Stachowski-Haberkorn S, Pesce S, Vuilleumier S. (2014) The coming of age of microbial ecotoxicology: report on the first two meetings in France. Environ Sci Pollut Res Int. 21:14241-14245
  9. González M. L., Molina V., Florez-Leiva L., Oriol L.,  Cavagna A.J., Dehairs F., Farias L., Fernandez C. 2014 Nitrogen fixation in the Southern Ocean: a case of study of the Fe-fertilized Kerguelen region (KEOPS II cruise) Biogeosciences Discuss. 11:17151-17185
  10. Jouandet M.-P., G.A. J. Jackson, F.C. Carlotti, M.P. Picheral, L.S. Stemmann, S. Blain  (2014) Rapid formation of large aggregates during the spring bloom of Kerguelen Island: observations and model comparisons. Biogeosciences Discuss 11:4393-4406.
  11. Landa, M., M. Cottrell, D. Kirchman, K. Kaiser, P.M. Medeiros, L. Tremblay, N. Batailler, J. Caparros, P. Catala, K. Escoubeyrou, L. Oriol, S. Blain, I. Obernosterer (2014) Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture. Environ Microbiol 16:1668-1681
  12. Lasbleiz M., K.  Leblanc, S. Blain, J. Ras, V. Cornet-Barthaux, S. Hélias Nunige, B. Quéguiner. Pigments, elemental composition (C, N, P, Si) and stoichiometry of particulate matter, in the naturally iron fertilized region of Kerguelen in the Southern Ocean. Biogeosciences 11:5931-5955
  13. Levipan H. A., V. Molina, C. Fernandez (2014) Nitrospina–like bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the Eastern South Pacific (central Chile ∼36° S). Environmental Microbiology Reports 6:565-573. DOI: 10.1111/1758-2229.12158.
  14. Lozano JC, Schatt P, Botebol H, Vergé V, Lesuisse E, Blain S, Carré I, Bouget FY (2014). Efficient gene targeting and foreign DNA removal by homologous recombination in the picoeukaryote Ostreococcus. Plant J 78:1073-1083.
  15. Malits A., Christaki U., Obenosterer I., Weinbauer M.G. (2014). Enhanced viral production and virus-mediated mortality of bacterioplankton in a natural iron-fertilized bloom event above the Kerguelen Plateau. Biogeoscences 11:5931-5935.  
  16. Ortega-Retuerta E., Fichot C., Arrigo K., Joux F. (2014) Relationship between temperature and substrate on bacterial activity under a massive under-ice phytoplankton bloom in the Chukchi Sea. Deep-Sea Research II 105:74-84.
  17. Perez G., Farias L., Fernandez C., Conde D, Piccini C. (2014) Incidence of phytoplankton and environmental conditions on the bacterial ammonium uptake in a subtropical coastal lagoon. Journal of Limnology 73:122-130
  18. Pulido-Villena E., Baudoux A.-C., Obernosterer I., Landa M., Caparros J., Catala P., Georges C., Harmand J., and Guieu C. (2014) Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea. Biogeosciences 11:5607-5619
  19. Rain-Franco A., Muñoz C., Fernandez C. (2014) Ammonium production off central Chile (36°S) by photodegradation ofphytoplankton-derived and marine dissolved organic matter. PLoS ONE 9(6): e100224
  20. Salter I, Schiebel R, Ziveri P, Movellan A, Lampitt R, Wolff GA (2014) Carbonate counter pump stimulated by natural iron fertilization in the Polar Frontal Zone. Nature Geoscience. 10 November 2014. DOI: 10.1038/NGEO2285
  21. Sanial V., van Beek P., Lansard  B., d’Ovidio F., Kestenare E., Souhaut M., Zhou M., Blain S. Study of the phytoplankton plume dynamics off Crozet Islands  (Southern Ocean): A geochemical-physical coupled approach. Journal of Geophysical Research 119:2227–2237
  22. Sauret C, Séverin T, Vétion G, Guigue C, Goutx M, Pujo-Pay M, Conan P, Fagervold SK, Ghiglione JF (2014) 'Rare biosphere' bacteria as key phenanthrene degraders in coastal seawaters. Environ Pollut. 194:246-253
  23. Severin T, Conan P, Durrieu de Madron X, Houpert L, Oliver MJ, Oriol L, Caparros J, Ghiglione JF and Pujo-Pay M (2014) Impact of open-ocean convection on nutrient and phytoplankton biomass and activity. Deep Sea research Part I 94: 62-71.
  24. Weirauch M. T. , A. Yang, M. Albu, A.G. Cote, A. Montenegro-Montero, P. Drewe, H.S. Najafabadi, S.A. Lambert, I. Mann, K. Cook, H. Zheng, A. Goity, H. van Bakel, J-C. Lozano, M. Galli, M. G. Lewsey, E. Huang, T. Mukherjee, X. Chen, J.S. Reece-Hoyes, S. Govindarajan, G. Shaulsky, A. J.M. Walhout, F-Y. Bouget, G. Ratsch, L. F. Larrondo, J. R. Ecker, T. R. Hughes (2014). Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity. Cell 158:1431-1443.

Chapitres d'ouvrage :

Sauret C., Ghiglione J-F. (2013) Monitoring of oil-degrading bacteria by stable isotope probing. In Encyclopedia of Aquatic Ecotoxicology (Férard, J.F. and Blaise, C., editors). Springer Publishers, Inc pp 751-766.

Dussud C., Ghiglione J-F. (2014). Bacterial degradation of synthetic plastics. CIESM Monograph n°46 on Marine Litters pp. 43 - 48 [F. Briand, ed.] In Marine litter in the Mediterranean and Black Seas, 180 p., CIESM Publisher, Monaco.

Joux F., Bertrand J-C., De Wit R., Grossi V., Intertaglia L., Lebaron P., Michotey V., Normand P., Peyret P., Raimbault P., Tamburini C., Urios L. (2014) Methods for studying microorganisms in the environment. In: Environmental Microbiology: Fundamentals and Applications. J-C. Bertrand, P. Caumette, P. Lebaron, P. Normand, T. Sime-Ngando (eds). Elsvevier Press. pp.757-830


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