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Laboratoire d'Océanographie Microbienne
UMR 7621
Fil d'arianeAccueil / Publications du LOMIC / Publications 2021
Publications du LOMIC

Publications 2021

Articles

  1. Blain S., M. Rembauville, O. Crispi and I. Obernosterer (2021) Synchronized autonomous sampling reveals coupled pulses of biomass and export of morphologically different diatoms in the Southern Ocean. Limnol. Oceanogr. 66:753–764. http://dx.doi.org/10.1002/lno.11638
  2. Burot C., Amiraux R., Bonin P., Guasco S., Babin M., Joux F., Marie D., Vilgrain L., Heipieper H., Rontani J-F. (2021) Viability and stress state of bacteria associated with suspended particulate matter in summer along a transect in Baffin Bay (Arctic Ocean). Sci. Tot. Environ. 770:145252. DOI: 10.1016/j.scitotenv.2021.145252
  3. Cheng, J., Jacquin, J., Conan, P., Pujo-Pay, M., Barbe, V., George, M., Fabre, P., Bruzaud, S., Ter Halle, A., Meistertzheim, A.-L., Ghiglione, J.-F., (2021). Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity. Front. Microbiol. 11 :610231. https://doi.org/10.3389/fmicb.2020.610231
  4. Christaki, U., A. Gueneugues, Y. Liu, , S. Blain, P. Catala, J. Colombet, P. Debeljak, L. Jardillier, S. Irion, F. Planchon, I. Sassenhagen, T. Sime-Ngando, I. Obernosterer (2021) Seasonal microbial food web dynamics in contrasting Southern Ocean productivity regimes. Limnol. Oceanogr. 66:108–122. doi:10.1002/lno.11591
  5. D’Ortenzio F., Taillandier V., Claustre H., Coppola L., Conan P., Dumas F., Durrieu du Madron X., Fourrier M., Gogou A., Karageorgis A., Lefevre D., Leymarie E., Oviedo A., Pavlidou A., Poteau A., Poulain P.M., Prieur L., Psarra S., Puy-Pay M., Ribera d’Alcal M., Schmechtig C., Terrats L., Velaoras D., Wagener T., Wimart - Rousseau C. (2021) BGC-Argo floats observe nitrate injection and spring phytoplankton increase in the surface layer of Levantine Sea (Eastern Mediterranean). Geophys. Res. Lett. 48:e2020GL091649. https://doi.org/10.1029/2020GL091649
  6. Debeljak P., S. Blain, A. Bowie, P. van der Merwe, B. Bayer, I. Obernosterer. (2021) Homeostasis drives intense microbial trace metal processing on marine particles. Limnol. Oceanogr. 66:3842–3855. doi:10.1002/lno.11923
  7. Demory D., Baudoux AC., Touzeau S., Weitz J., Simon N., Sciandra A., Rabouille S., Bernard O. (2021) A thermal trade-off between viral production and degradation drives phytoplankton-virus population dynamics. Ecol. Lett. 24:1133–1144. DOI: 10.1111/ele.13722
  8. Freney E., Sellegri K., Nicossia A., Trueblood J., Rinaldi M., Williams L., Prevot A., Thyssen M., Gregori G., Haentjens N., Dinasquet J., Obernosterer I., Van-Wambeke F., Engel A., Zancker B., Desboeufs K., Asmi E., Timmonen H., Guieu C. Mediterranean nascent sea spray organic aerosol and relationships with seawater biogeochemistry. Atmospheric chemistry and physics. Special Issue: Atmospheric deposition in the low-nutrient-low-chlorophyll (LNLC) ocean: effects on marine life today and in the future. Atmosph. Chem. Phys. 21:1065–10641. https://doi.org/10.5194/acp-21-10625-2021
  9. Gazeau F., F. Van Wambeke, E. Marañón, M. Pérez-Lorenzo, S. Alliouane, C. Stolpe, T. Blasco, N. Leblond, B. Zäncker, A. Engel, B. Marie, J. Dinasquet, C. Guieu (2021) Impact of dust addition on the metabolism of Mediterranean plankton communities and carbon export under present and future conditions of pH and temperature, Biogeosciences. 18:5423–5446. https://doi.org/10.5194/bg-18-5423-2021.
  10. Gazeau F., Ridame C., Van Wambeke F., Alliouane S., Stolpe C., Irisson J-O., Marro S., Grisoni J-M., De Liège G., Nunige S., Djaoudi K., Pulido-Villena E., Dinasquet J., Obernosterer I., Catala P., Guieu C. (2021) Impact of dust enrichment on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview. Biogeoscience special Issue: Atmospheric deposition in the low-nutrient-low-chlorophyll (LNLC) ocean: effects on marine life today and in the future. Biogeosciences. 18:5011–5034. doi.org/10.5194/bg-18-5011-202.
  11. Henschke N., Blain S., Cherel Y., Cotté C., Espinasse B., Hunt B.P.V., Pakhomov E. A.  (2021) Population demographics and growth rate of Salpa thompsoni on the Kerguelen Plateau. J. Mar. Sys. 214 :103489. https://doi.org/10.1016/j.jmarsys.2020.103489
  12. Hernandez-Magana A.E., Y. Liu, P. Debeljak, O. Crispi, B. Marie, C. Koedooder, I. Obernosterer (2021) Prokaryotic diversity and activity in contrasting productivity regimes in the Kerguelen region (Southern Ocean) J. Mar. Sys. 221:103561. DOI:10.1016/J.JMARSYS.2021.103561.
  13. Inomura K., Masuda T., Eichner M., Rabouille S., Zavřel T., Červený J., Vancová M., Bernát G., Armin G., Claquin P., Kotabová E., Stephan S., Suggett D.J., Deutsch C., Prášil O. (2021) Quantifying Cyanothece growth under DIC limitation. Comput. Struct. Biotechnol. J. 19:6456–6464. DOI: 10.1016/j.csbj.2021.11.036
  14. Jacquin J, Callac N, Cheng J, Giraud C, Gorand Y, Denoual C, Pujo-Pay M, Conan P, Meistertzheim A-L, Barbe V, Bruzaud S, Ghiglione J-F. (2021) Microbial Diversity and Activity During the Biodegradation in Seawater of Various Substitutes to Conventional Plastic Cotton Swab Sticks. Front. Microbiol. 12:604395. https://doi.org/10.3389/fmicb.2021.604395.
  15. Jara B., Tucca F., Srain B., Mejanelle L., Aranda M., Fernandez C., Pantoja S. (2021) Antibiotics florfenicol and flumequine in the water column and sediments of Puyuhuapi Fjord, Chilean Patagonia. Chemosphere 275 :130029. https://doi.org/10.1016/j.chemosphere.2021.130029
  16. Lambert S., Lozano J-C., Bouget F-Y., Galand P.E. (2021) Seasonal marine microorganisms change neighbours under contrasting environmental conditions. Environ. Microbiol. 23:2592–2604. https://doi.org/10.1111/1462-2920.15482
  17. Landolfi A, Rabouille S, Mouriño-Carballido B. (2021) Editorial: Marine N2 Fixation: Recent Discoveries and Future Challenges. Front. Mar. Sci. 8:176. https://doi.org/10.3389/fmars.2021.664195
  18. Leblanc K., Lafond A., Cornet V., Legras J., Marie B., Quéguiner B. (2021) Deep particle stocks following the summer bloom around the Kerguelen islands: Insights into diatoms physiological state, community structure and mortality modes. J. Mar. Syst. 222:103609. https://doi.org/10.1016/j.jmarsys.2021.103609.
  19. Lheureux A, Savoye N, Del Amo Y, Goberville E, Bozec Y, Breton E, Conan P, L’Helguen S, Mousseau L, Raimbault P, Rimelin-Maury P, Seuront L, Vuillemin R, Caparros J, Cariou T, Cordier MA, Corre AM, Costes L, Crispi O, Crouvoisier M, de Lary de Latour H, Derriennic H, Devesa J, Durozier M, Ferreira S, Garcia N, Grossteffan E, Gueux A, Lafont M, Lagadec V, Lecuyer E, Leroux C, Macé E, Maria E, Mornet L, Nowaczyk A, Parra M, Petit F, David V (2021) Bi-decadal variability in physico-biogeochemical characteristics of temperate coastal ecosystems: from large-scale to local drivers. Mar. Ecol. Progr. Ser. 660:19–35. https://doi.org/10.3354/meps13577.
  20. Maggioni F, Pujo-Pay M, Aucan1 J, Cerrano C, Calcinai B, Payri C, Benzoni F, Letourneur Y, Rodolfo-Metalpa R (2021) The Bouraké semi-enclosed lagoon (New Caledonia) – a natural laboratory to study the lifelong adaptation of a coral reef ecosystem to extreme environmental conditions. Biogeosciences. 18:5117–5140. https://doi.org/10.5194/bg-18-5117-2021.
  21. Marañón E., Van Wambeke F., Uitz J., Boss E. S., Pérez-Lorenzo M., Dinasquet J., Haëntjens N., Dimier C., Taillandier V. (2021) Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea during late spring. Biogeoscience. 18:5699–5717. https://doi.org/10.5194/bg-18-1749-2021
  22. Massicotte P., Amon R., Antoine D., Archambault P., Balzano S., Bélanger S., Benner R., Bœuf D., Bricaud A., Bruyant F., Chaillou G., Chami M., Charrière B., Chen J., Claustre H., Coupel P., Delsaut N., Doxaran D., Ehn J., Fichot C., Forget M-H., Fu P., Gagnon J., Garcia N., Gasser B., Ghiglione J-F., Gorsky G., Gosselin M., Gourvil P., Gratton Y., Guillot P., Heipieper H.J., Heussner S., Hooker S.B., Huot Y., Jacq V., Jeanthon C., Jeffrey W., Joux F., Kawamura K., Lansard B., Leymarie E., Link H., Lovejoy C., Marec C., Marie D., Martin J., Massé G., Matsuoka A., McKague V., Mignot A., William L. Miller, Miquel J-C., Mucci A., Ono K., Ortega-Retuerta E., Panagiotopoulos C. , Papakyriakou T. , Para J., Picheral M., Piepenburg D., Prieur L., Raimbault P., Ras J., Reynolds R. A., Rochon A., Rontani J-F., Schmechtig C., Schmidt S., Sempéré R., Shen Y., Song G., Stramski D., Stroud G.D., Eri Tachibana, Thirouard A., Tolosa I., Tremblay J-E., Vaïtilingom M., Daniel Vaulot, Vaultier F., Volkman K.J., Jorien E. Vonk, Xie H., Zheng G., Marcel B. (2020) The Malina oceanographic expedition: How do changes in ice cover, permafrost and UV radiation impact biodiversity and biogeochemical fluxes in the Arctic Ocean? Earth System Science Data. 13:1561–1592. https://doi.org/10.5194/essd-13-1561-2021.
  23. Odobel C, Dussud C, Philip L, Derippe G, Lauters M, Eyheraguibel B, Burgaud G, Ter Halle A, Meistertzheim AL, Bruzaud S, Barbe V, Ghiglione JF (2021) Bacterial abundance, diversity and activity during long term colonization of non-biodegradable and biodegradable plastics in seawater. Front. Microbiol. 12:734782. doi: 10.3389/fmicb.2021.734782
  24. Ortega‐Retuerta, E., Devresse, Q., Caparros, J., Marie, B., Crispi, O., Catala, P., Joux, F., Obernosterer, I. (2021) Dissolved organic matter released by two marine heterotrophic bacterial strains and its bioavailability for natural prokaryotic communities. Environ. Microbiol. 23:1363–1378. https://doi.org/10.1111/1462-2920.15306.
  25. Pedrotti ML, Petit S, Eyheraguibel B, Kerros ME, Elineau A, Ghiglione JF, Loret JF, Rostan A and Gorsky G (2021) Pollution by anthropogenic microfibers in North-West Mediterranean sea and efficiency of microfiber removal by a wastewater treatment plant. Sci. Tot. Environ. 758:144195. https://doi.org/10.1016/j.scitotenv.2020.144195
  26. Pérez, G.L., Galí, M., Royer, S.-J., Gerea, M., Ortega-Retuerta, E., Gasol, J.M., Marrasé, C., Simó, R. (2021) Variability of phytoplankton light absorption in stratified waters of the NW Mediterranean Sea: the interplay between pigment composition and the packaging effect. Deep-Sea Res. I: Oceanogr. Res. Pap. 169:103460. https://doi.org/10.1016/j.dsr.2020.103460.
  27. Polerecky L., Eichner M., Masuda T., Zavrel T., Rabouille S., Campbell D.A. and Halsey K.H. (2021) Calculation and interpretation of substrate assimilation rates in microbial cells based on isotopic composition data obtained by nanoSIMS. Front. Microbiol. 12:621634. DOI: 10.3389/fmicb.2021.621634.
  28. Polerecky L., Masuda T., Eichner M., Rabouille S., Vancova M., Kienhuis M.V.M, Bernat G., Bonomi-Barufi J., Campbell D.A., Claquin P., Červený J., Giordano M., Kotabová E., Kromkamp J., Lombardi A.T., Lukeš M., Prasil O., Stephan S., Sugget, D., Zavrel T. and Halsey K.H. (2021) Temporal patterns and intra-and inter-cellular variability in carbon and nitrogen assimilation by the unicellular cyanobacterium Cyanothece sp. ATCC51142. Front. Microbiol. 12:620915. DOI: 10.3389/fmicb.2021.620915. <hal-03327232v1>
  29. Rabouille S., Campbell D.A., Masuda T., Zavrel T., Bernat G., Polerecky L., Halsey K.H., Eichner M., Kotabová E., Stephan S., Lukeš M., Claquin P., Bonomi-Barufi J., Lombardi A.T., Červený J., Suggett D., Giordano M., Kromkamp J., Prasil O. (2021) Electron and biomass dynamics of Cyanothece under interacting nitrogen and carbon limitations. Front. Microbiol. 12:617802. doi: 10.3389/fmicb.2021.617802
  30. Rabouille S., Randall B., Talec A., Raimbault P., Blasco T., Latifi A., and Oschlies A. (2021) Independence of marine unicellular diazotroph Crocosphaera watsonii WH8501 to the presence of NO3–. Microorganisms. 9:21073. DOI: 10.3390/microorganisms9102073.
  31. Rain-Franco A, de Moraes GP, Beier S. (2021) Cryopreservation and Resuscitation of Natural Aquatic Prokaryotic Communities. Front. Microbiol. 11:10.3389 DOI: 10.3389/fmicb.2020.597653
  32. Ratnarajah, L., S. Blain, P. W. Boyd, M. Fourquez, I. Obernosterer, and A. Tagliabue. (2021) Resource Colimitation Drives Competition Between Phytoplankton and Bacteria in the Southern Ocean. Geophys. Res. Lett. 48:e2020GL088369. doi:10.1029/2020GL088369.
  33. Sebastián, M., Ortega‐Retuerta, E., Gómez‐Consarnau, L., Zamanillo, M., Álvarez, M., Arístegui, J., Gasol, J.M. (2021) Environmental gradients and physical barriers drive the basin‐wide spatial structuring of Mediterranean Sea and adjacent eastern Atlantic Ocean prokaryotic communities. Limnol. Oceanogr. 66:4077–4095. https://doi.org/10.1002/lno.11944.
  34. Sun Y., Debeljak P., Obernosterer I. (2021) Microbial iron and carbon metabolism as revealed by taxonomy-specific functional diversity in the Southern Ocean. ISME J. 15:2933–2946. doi.org/10.1038/s41396-021-00973-3.
  35. Taketani, R., Dini-Andrede, F., Beier, S., Fernandez, C. (2021) Editorial: Advancements in the understanding of anthropogenic Impacts on the microbial ecology and function of aquatic environments. Front. Mar. Biol. 12:820697. doi: 10.3389/fmicb.2021.820697
  36. Ter Halle A, Ghiglione JF (2021) Nanoplastics: a complex, polluting terra incognita. Environ. Sci. Technol. 55:14466–14469. DOI: 10.1021/acs.est.1c04142
  37. Trueblood J., A. Nicosia, A. Engel, B. Zäncker, M. Rinaldi, E. Freney, M. Thyssen, I. Obernosterer, J. Dinasquet, F. Belosi, A. Tovar-Sanchez, A. Rodriguez-Romero, G. Santachiara, C. Guieu, and K. Sellegri (2021) A Two-Component Parameterization of Marine Ice Nucleating Particles Based on Seawater Biology and Sea Spray Aerosol Measurements in the Mediterranean Sea. Atmos. Chem. Phys. 21:4659–4676. https://doi.org/10.5194/acp-21-4659-2021.
  38. Urbina M.A., Luna-Jorquera G., Thiel M., Acuña-Ruz T., Amenábar Cristi M.A., Andrade C., Ahrendt C, Castillo C, Chevallier A., Cornejo-D'Ottone M., Correa-Araneda F., Duarte C., Fernández C., Galvàn-Malagòn C, Godoy C., González-Aravena M., Hinojosa I.A., Jorquera A, Kiessling T., Lardies M.A., Lenzi J., Mattar C., Munizaga M., Olguín-Campillay N., Perez-Venegas D. J., Portflitt-Toro M., Pozo K., Pulgar J., Vargas EA. (2021) Country's response to tackling plastic pollution in aquatic ecosystems: The Chilean way. Aquatic Conservation: Mar. Freshwater Ecosyst. 31:420–440. https://doi.org/10.1002/aqc.3469
  39. Valdes, V., Fernandez, C. (2021) Effect of three pesticides used in salmon farming on ammonium uptake in Central-Southern and Northern Patagonia, Chile. Front. Mar. Sci. 7:602002. https://doi.org/10.3389/fmars.2020.602002
  40. Van Wambeke F., Pulido E., Dinasquet J., Djaoudi K., Engel A., Garel M., Guasco S., Nunige S., Taillandier V., Zäncker  B., Tamburini C. (2021) Spatial patterns of biphasic ectoenzymatic kinetics related to biogeochemical properties in the Mediterranean Sea. Biogeoscience, Special Issue: Atmospheric deposition in the low-nutrient-low-chlorophyll (LNLC) ocean: effects on marine life today and in the future. J. Mar. Systems. 222:103609. https://doi.org/10.5194/bg-2020-253.
  41. Van Wambeke F., Taillandier V., Desboeufs K., Pulido-Villena E., Dinasquet J., Engel A., Maranon E., Ridame C., Guieu C. (2021) Influence of atmospheric deposition on biogeochemical cycles in an oligotrophic ocean system. Biogeoscience. 18:5699–5717. https://doi.org/10.5194/bg-18-5699-2021
  42. Weiss L, Ludwig W, Heussner S, Canals M, Ghiglione J-F, Estournel C, Constant M, Kerhervé P (2021) The missing ocean plastic sink: gone with the rivers. Science. 373: 107–111. DOI: 10.1126/science.abe0290
  43. Wimart-Rousseau C., Wagener T., Álvarez M., Moutin T., Fourrier M., Coppola L., Niclas-Chirurgien L., Raimbault P., D’Ortenzio F., Durrieu de Madron X., Taillandier V., Dumas F., Conan P., Pujo-Pay M., Lefèvre D. (2021) Seasonal and Interannual Variability of the CO2 System in the Eastern Mediterranean Sea: A Case Study in the North Western Levantine Basin. Front. Mar. Sci. 8:649246. https://doi.org/10.3389/fmars.2021.649246.
  44. Zamanillo M., E. Ortega-Retuerta, C. Cisternas-Novoa, C. Marrasé, C. Pelejero, J. Pascual, J. M. Gasol, A. Engel, R. Simó (2021) Uncoupled seasonal variability of transparent exopolymer and Coomassie stainable particles in coastal Mediterranean waters: Insights into sources and driving mechanisms. Elementa: Science of the Anthropocene. 9:00165. doi: https://doi.org/10.1525/elementa.2020.00165.

 

15/01/23

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