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Fil d'arianeAccueil / Publications du LOMIC / Publications 2023
Publications du LOMIC

Publications 2023

Articles

  1. Beauvais M., Schatt P., Montiel L., Logares R., Galand P.E., Bouget F-Y. (2023) Functional redundancy of seasonal vitamin B 12 biosynthesis pathways in coastal marine microbial communities. Environmental Microbiology. 25:3753-3770. https://doi.org/10.1111/1462-2920.16545 ⟨hal-04766744⟩
  2. Bouchachi N., Obernosterer I., Carpaneto Bastos C., Li F., Scenna L., Marie B., Crispi O., Catala P., Ortega-Retuerta E. (2023)Effects of phosphorus limitation on the bioavailability of DOM released by marine heterotrophic prokaryotes. Microbial Ecology. 86:1961-1971. DOI: 10.1007/s00248-023-02201-1 // https://hal.science/hal-04117517v1
  3. Bouchachi, N., Obernosterer, I., Marie, B., Crispi, O., Ortega-Retuerta, E. (2023) Phosphorus limitation determines the quality of dissolved organic matter released by marine heterotrophic prokaryotes. Limnol. Oceanogr. Lett. 8:330-339. https://doi.org/10.1002/lol2.10287 // https://hal.science/hal-03860797v1
  4. Breton E, Savoye N, Rimmelin-Maury P, Sautour B, Goberville E, Lheureux A, Cariou T, Ferreira S, Agogué H, Alliouane S, Aubert F, Aubin S, Berthebaud E, Blayac H, Blondel L, Boulart C, Bozec Y, Bureau S, Caillo A, Cauvin A, Cazes J-B, Chasselin L, Claquin P, Conan P, Cordier M-A, Costes L, Crec’hriou R, Crispi O, Crouvoisier M, David V, Del Amo Y, De Lary H, Delebecq G, Devesa J, Domeau A, Durozier M, Emery C, Feunteun E, Fauchot J, Gentilhomme V, Geslin S, Giraud M, Grangeré K, Grégori G, Grossteffan E, Gueux A, Guillaudeau J, Guillou G, Harrewyn M, Jolly O, Jude-Lemeilleur F, Labatut P, Labourdette N, Lachaussée N, Lafont M, Lagadec V, Lambert C, Lamoureux J, Lanceleur L, Lebreton B, Lecuyer E, Lemeille D, Leredde Y, Leroux C, Leynaert A, L’Helguen S, Liénart C, Macé E, Maria E, Marie B, Marie D, Mas S, Mendes F, Mornet L, Mostajir B, Mousseau L, Nowaczyk A, Nunige S, Parra R, Paulin T, Pecqueur D, Petit F, Pineau P, Raimbault P, Rigaut-Jalabert F, Salmeron C, Salter I, Sauriau P-G, Seuront L, Sultan E, Valdès R, Vantrepotte V, Vidussi F, Voron F, Vuillemin R, Zudaire L, Garcia N (2023). Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1135446
  5. Cheng J., Leistenschneider D., Philip L., Jacquin J., Meistertzheim A.L.,  Barbe V., Ter Halle A., Chapron L., Lartaud F., Bertrand S., Escriva H., Ghiglione J-F. (2023) Impacts of microplastic ingestion on physiological, biochemical, genetic expression and gut microbiota of the filter-feeder amphioxus. Environment International 172:107750 https://doi.org/10.1016/j.envint.2023.107750 // hal-04010790
  6. Courboulès J., Vidussi F., Soulié T., Nikiforakis E., Heydon M., Mas S., Joux F., Mostajir B. (2023) Effects of an experimental terrestrial runoff on the components of the plankton food web in a Mediterranean coastal lagoon. Front. Mar. Sci. 10:1200757. https://doi.org/10.3389/fmars.2023.1200757
  7. Debeljak P., Bayer B., Sun Y., Herndl G.J., Obernosterer I. (2023) Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean. Microbiome: 11:187. doi.org/10.1186/s40168-023-01600-3 // hal-04198032
  8. Devresse Q., Becker K.W., Dilmahamod A.F., Ortega‐Retuerta E., Engel A. (2023) Dissolved organic matter fluorescence as a tracer of upwelling and microbial activities in two cyclonic eddies in the Eastern Tropical North Atlantic. Journal of Geophysical Research: Oceans 128:e2023JC019821 https://doi.org/10.1029/2023JC019821 // hal-04198204
  9. Etienne R. S., B. Haegeman, Á. Dugo-Cota, C. Vilà, A. Gonzalez-Voyer, L. Valente (2023) The phylogenetic limits to diversity-dependent diversification. Systematic Biology. 72:433-445. https://doi.org/10.1093/sysbio/syac074 // hal-04219437
  10. Gomez N.C.F., Cragg S.M., Ghiglione J-F., Onda D.F.L. (2023) Accumulation and exposure classifications of plastics in the different coastal habitats in the western Philippine archipelago. Environmental Pollution 337:122602. https://doi.org/10.1016/j.envpol.2023.122602
  11. Habib J. , Caroline Ulses, Claude Estournel, Milad Fakhri, Patrick Marsaleix, Pujo-Pay M., Fourrier M., Coppola L., Mignot A., L. Mortier, Conan P. (2023) Seasonal and interannual variability of the pelagic ecosystem and of the organic carbon budget in the Rhodes Gyre (eastern Mediterranean): influence of winter mixing. Biogeosciences. 20:3203-3228. https://doi.org/10.5194/bg-20-3203-2023 // insu-04188260
  12. Leistenschneider D., Wolinski A., Cheng J., ter Halle A., Duflos G., Huvet A., Paul-Pont I., Lartaud F., Galgani F., Lavergne E., Meistertzheim A.L., Ghiglione J-F. (2023) A critical review on the evaluation of toxicity and risk assessment of plastics in the marine environment. Science of the Total Environment. 896:164955. https://doi.org/10.1016/j.scitotenv.2023.164955 // hal-04187011
  13. Lheureux A., David V., Del Amo Y., Soudant D., Auby I., Bozec Y., Conan P., Ganthy F., Grégori G., Lefebvre A., Leynart A., Rimmelin-Maury P., Souchu P., Vantrepote V., Blondel C., Cariou T., Crispi O., Cordier M-A., Crouvoisier M., Duquesne V., Ferreira S., Garcia N., Gouriou L., Grosteffan E., Le Merrer Y., Meteigner C., Retho M., Tournaire M-P., Savoye N. (2023). Trajectories of nutrients concentrations and ratios in the French coastal ecosystems: 20 years of changes in relation with large-scale and local drivers. Science of The Total Environment, 857: 159619. https://doi.org/10.1016/j.scitotenv.2022.159619
  14. Lombard F., Bourdin G., Pesant S., Agostini S., Baudena A., Boissin E., Cassar N., Clampitt M., Conan P., Da Silva O., Dimier C., Douville E., Elineau A., Fin J., J. Flores M., Ghiglione J-F., … Pujo-Pay M.,  et al. (2023) Open science resources from the Tara Pacific expedition across the surface ocean and coral reef ecosystems. Scientific Data 10:324. https://doi.org/10.1038/s41597-022-01757-w  // hal-04164118
  15. Maggioni F., Bell J.J, Pujo-Pay M., Shaffer M., Cerrano C., Lemonnier H., Letourneur Y., Rodolfo-Metalpa R. (2023) Sponge organic matter recycling: Reduced detritus production under extreme environmental conditions. Marine Pollution Bulletin. 190:114869. https://doi.org/10.1016/j.marpolbul.2023.114869 // hal-04065549
  16. Marshall T.A., Sigman D.M., Beal L.M., Foreman A., Martínez‐García A., Blain S., Campbell E., Fripiat F., Granger R., Harris E. et al. (2023) The Agulhas Current Transports Signals of Local and Remote Indian Ocean Nitrogen Cycling. Journal of Geophysical Research: Oceans. 128 : e2022JC019413. https://doi.org/10.1029/2022JC019413
  17. Mercier M.J., Poulain-Zarcos M., Ourmières Y., Ghiglione J-F., ter Halle A. (2023) Plastic litter in the oceans: most of it is gone missing, but it might just be transformed or transported. Europhysics News 54:24-27. https://doi.org/10.1051/epn/2023303 // hal-04139642
  18. Ourmieres Y., Arnaud M., Deixonne P., Ghiglione J-F., Albignac M., Poulain-Zarcos M., Mercier M., Ter Halle A. (2023) Inferring microplastics origins in the Mediterranean Sea by coupling modelling and in-situ measurements. Marine Pollution Bulletin 195:115333. https://doi.org/10.1016/j.marpolbul.2023.115333
  19. Paul-Pont I., Ghiglione J-F., Gastaldi E., ter Halle A., Huvet A., Bruzaud S., Lagarde F., Galgani F., Duflos G., George M., Fabre P. (2023) Discussion about suitable applications for biodegradable plastics regarding their sources, uses and end of life. Waste Management Journal 157:242-248. https://doi.org/10.1016/j.wasman.2022.12.022 // hal-04186887
  20. Philippe A., Noël C., Eyheraguibel B., Briand J-F., Paul-Pont I., Ghiglione J-F., Coton E., Burgaud G. (2023). Fungal diversity and dynamics during long-term immersion of conventional and biodegradable plastics in the marine environment. Diversity, 15:579. https://doi.org/10.3390/d15040579 // hal-04107520
  21. Quévreux P., Haegeman B., Loreau M. (2023) Spatial heterogeneity of interaction strength has contrasting effects on synchrony and stability in trophic metacommunities. Ecology Letters, 26:1817-1828. // hal-03829838v3
  22. Sanchez R., Groc M., Vuillemin R., Pujo-Pay M., Raimbault V. (2023) Development of a frugal, in-situ sensor implementing a ratiometric method for continuous monitoring of turbidity in natural waters. Sensors. 23:1897. https://doi.org/10.3390/s23041897 // hal-03975657
  23. Sands E., Davies S., Puxty R.J., Vergé V., Bouget F-Y., Scalan D.J., Carré I.A. (2023) Genetic and physiological responses to light quality in a deep ocean ecotype of Ostreococcus, an ecologically important photosynthetic picoeukaryote. Journal of Experimental Botany. 74 :6773-6789. https://doi.org/10.1093/jxb/erad347 ⟨hal-04286525⟩
  24. Shao, Z., Xu, Y., Wang, H., Luo, W., Wang, L., Huang, Y., Agawin, N. S. R., Ahmed, A., Benavides, M., Bentzon-Tilia, M., Berman-Frank, I., Berthelot, H., Biegala, I. C., Bif, M. B., Bode, A., Bonnet, S., Bronk, D. A., Brown, M. V., Campbell, L., Capone, D. G., Carpenter, E. J., Cassar, N., Chang, B. X., Chappell, D., Chen, Y.-L., Church, M. J., Cornejo-Castillo, F. M., Detoni, A. M. S., Doney, S. C., Dupouy, C., Estrada, M., Fernandez, C., Fernández-Castro, B., Fonseca-Batista, D., Foster, R. A., Furuya, K., Garcia, N., Goto, K., Gago, J., Gradoville, M. R., Hamersley, M. R., Henke, B. A., Hörstmann, C., Jayakumar, A., Jiang, Z., Kao, S.-J., Karl, D. M., Kittu, L. R., Knapp, A. N., Kumar, S., LaRoche, J., Liu, H., Liu, J., Lory, C., Löscher, C. R., Marañón, E., Messer, L. F., Mills, M. M., Mohr, W., Moisander, P. H., Mahaffey, C., Moore, R., Mouriño-Carballido, B., Mulholland, M. R., Nakaoka, S., Needoba, J. A., Raes, E. J., Rahav, E., Ramírez-Cárdenas, T., Reeder, C. F., Riemann, L., Riou, V., Robidart, J. C., Sarma, V. V. S. S., Sato, T., Saxena, H., Selden, C., Seymour, J. R., Shi, D., Shiozaki, T., Singh, A., Sipler, R. E., Sun, J., Suzuki, K., Takahashi, K., Tan, Y., Tang, W., Tremblay, J.-É., Turk-Kubo, K., Wen, Z., White, A. E., Wilson, S. T., Yoshida, T., Zehr, J. P., Zhang, R., Zhang, Y., and Luo, Y.-W.: Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N2 fixation, Earth Syst. Sci. Data. 15:3673–3709. https://doi.org/10.5194/essd-15-3673-2023, 2023.
  25. Yan K., J. Zhou, Feng C., Wang S., Haegeman B., Zhang W., Chen J., Zhao S., Zhou J., Xu J., Wang  H. (2023) Abundant fungi dominate the coexistence of microbiota in soil of contaminated site: High-precision community analysis by full-length sequencing. Science of the Total Environment. 861:160563. https://doi.org/10.1016/j.scitotenv.2022.160563 // hal-04219537
  26. Zhang R., Debeljak P., Blain S., Obernosterer I. (2023) Seasonal shifts in Fe-acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling. Environ. Microbiol. 25 :1816-1829. https://doi.org/10.1111/1462-2920.16397 // hal-04093948

 

Pré-publication(s)

Dennu L., Devic M., Rigonato J., Falciatore A., Lozano J-C., Valérie Vergé V., Cédric Mariac C., Olivier Jaillon O., The Dark Edge genomics sampling team, Sabot F., Bouget F-Y. (2023) Biological and genomic resources for the cosmopolitan phytoplankton Bathycoccus: Insights into genetic diversity and major structural variations. BioRxiv. https://doi.org/10.1101/2023.10.16.562038 ⟨hal-04286701⟩

Devic M., Dennu L., Lozano J-C., Mariac C., Vergé V., Schatt P., Nouget F-Y., Sabot F. (2023) An INDEL genomic approach to explore population diversity of phytoplankton : Bathycoccus, a case study. BioRxiv. https://doi.org/10.1101/2023.02.09.527951 ⟨hal-04286658⟩


SEANOE | Jeu de données

PHYTOBS (2023). PHYTOBS dataset - French National Service of Observation for Phytoplankton in coastal waters. SEANOE. https://doi.org/10.17882/85178

Metzl N., Fin J., Lo Monaco C., Mignon C., Alliouane S., Antoine D., Bourdin G., Boutin J., Bozec Y., Conan P., Coppola L., Douville E., Durrieu de Madron X., Gattuso J-P., Gazeau F., Golbol  M., Lansard B., Lefèvre D., Lefèvre N., Lombard F., Louanchi F., Merlivat L., Olivier L., Petrenko A., Petton S., Pujo-Pay M., Rabouille C., Reverdin G., Ridame C., Tribollet A., Vellucci V., Wagener T., Wimart-Rousseau C. (2023). A synthesis of ocean total alkalinity and dissolved inorganic carbon measurements from 1993 to 2022: the SNAPO-CO2-v1 dataset. SEANOE. https://doi.org/10.17882/95414

 

 

20/11/24

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